Imaging dynamic and selective low-complexity domain interactions that control gene transcription

S Chong, C Dugast-Darzacq, Z Liu, P Dong, GM Dailey… - Science, 2018 - science.org
INTRODUCTION DNA binding transcription factors (TFs) are quintessential regulators of
eukaryotic gene expression. Early studies of TFs revealed their well-structured DNA binding …

Real-time dynamics of RNA polymerase II clustering in live human cells

…, A Senecal, L Muresan, C Dugast-Darzacq… - Science, 2013 - science.org
Transcription is reported to be spatially compartmentalized in nuclear transcription factories
with clusters of RNA polymerase II (Pol II). However, little is known about when these foci …

RNA polymerase II clustering through carboxy-terminal domain phase separation

M Boehning, C Dugast-Darzacq, M Rankovic… - Nature structural & …, 2018 - nature.com
… Samples were then incubated for 1 h on ice (4 C), at room temperature (22 C), or in an
incubator at 37 C or 45 C before microscopy analysis. Labeled (without MBP tag) and unlabeled (…

Single-molecule tracking in live cells reveals distinct target-search strategies of transcription factors in the nucleus

…, L Bosanac, II Cissé, L Boudarene, C Dugast-Darzacq… - Elife, 2014 - elifesciences.org
… We found that c-Myc is a global explorer of the nucleus. In contrast, the positive transcription
elongation factor P-TEFb is a local explorer that oversamples its environment. Consequently…

Evidence for DNA-mediated nuclear compartmentalization distinct from phase separation

…, Y Hao, AB Heckert, KK Umemoto, C Dugast-Darzacq… - Elife, 2019 - elifesciences.org
10.7554/eLife.47098.001 RNA Polymerase II (Pol II) and transcription factors form concentrated
hubs in cells via multivalent protein-protein interactions, often mediated by proteins with …

[HTML][HTML] Probing the target search of DNA-binding proteins in mammalian cells using TetR as model searcher

…, C Dugast-Darzacq, J Chen, C Richter… - Nature …, 2015 - nature.com
… In each measured nucleus, we correlated k Obs with the concentration c of RevTetR-GFP,
measured with two-photon fluorescence correlation spectroscopy (FCS) 46 (Fig. 4b inset and …

[PDF][PDF] Tuning levels of low-complexity domain interactions to modulate endogenous oncogenic transcription

S Chong, TGW Graham, C Dugast-Darzacq, GM Dailey… - Molecular Cell, 2022 - cell.com
Gene activation by mammalian transcription factors (TFs) requires multivalent interactions of
their low-complexity domains (LCDs), but how such interactions regulate transcription …

[HTML][HTML] Structure of the human SAGA coactivator complex

…, MN Esbin, RK Louder, C Dugast-Darzacq… - Nature structural & …, 2021 - nature.com
The SAGA complex is a regulatory hub involved in gene regulation, chromatin modification,
DNA damage repair and signaling. While structures of yeast SAGA (ySAGA) have been …

[HTML][HTML] Open-source RNA extraction and RT-qPCR methods for SARS-CoV-2 detection

TGW Graham, C Dugast-Darzacq, GM Dailey… - PloS one, 2021 - journals.plos.org
… protocols: 1) 75C for 30 min, 2) 95C for 5 min, followed by 75C for 30 min, 3) 37C for 30
min in the presence of 0.4 mg/mL proteinase K, followed by 95C for 5 min and 75C for 30 min. …

Screening a library of FDA-approved and bioactive compounds for antiviral activity against SARS-CoV-2

…, X Nguyenla, C Dugast-Darzacq… - ACS infectious …, 2021 - ACS Publications
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the causative agent of
coronavirus disease 2019 (COVID-19), has emerged as a major global health threat. The COVID…