User profiles for C. Marotz

Clarisse (Lisa) Marotz

Native Microbials
Verified email at nativemicrobials.com
Cited by 21001

Contamination in low microbial biomass microbiome studies: issues and recommendations

R Eisenhofer, JJ Minich, C Marotz, A Cooper… - Trends in …, 2019 - cell.com
Next-generation sequencing approaches in microbiome research have allowed surveys of
microbial communities, their genomes, and their functions with higher sensitivity than ever …

The microbiome and human biology

R Knight, C Callewaert, C Marotz… - Annual review of …, 2017 - annualreviews.org
Over the past few years, microbiome research has dramatically reshaped our understanding
of human biology. New insights range from an enhanced understanding of how microbes …

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

…, E Loftfield, C Lozupone, M Maher, C Marotz… - Nature …, 2019 - nature.com
To the Editor—Rapid advances in DNA-sequencing and bioinformatics technologies in the
past two decades have substantially improved understanding of the microbial world. This …

[HTML][HTML] Focus: microbiome: treating obesity and metabolic syndrome with fecal microbiota transplantation

CA Marotz, A Zarrinpar - The Yale journal of biology and medicine, 2016 - ncbi.nlm.nih.gov
C) Representative data showing metagenomic diversity increases following FMT from lean
… Youngster I, Sauk J, Pindar C. et al. Fecal microbiota transplant for relapsing Clostridium …

[PDF][PDF] QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

…, YX Liu, E Loftfield, C Lozupone, M Maher, C Marotz… - 2018 - peerj.com
We present QIIME 2, an opensource microbiome data science platform accessible to users
spanning the microbiome research ecosystem, from scientists and engineers to clinicians …

Divergent clonal evolution of castration-resistant neuroendocrine prostate cancer

…, JM Mosquera, M Benelli, L Puca, J Cyrta, C Marotz… - Nature medicine, 2016 - nature.com
… (c) Allele-specific analysis of tumors at three time points from subject WCMC161: lymph
node (CRPC-Adeno), bone biopsy (CRPC-Adeno) and liver biopsy (small-cell CRPC-NE). Top, …

American gut: an open platform for citizen science microbiome research

…, D Knights, T Kosciolek, J Ladau, J Leach, C Marotz… - Msystems, 2018 - Am Soc Microbiol
Although much work has linked the human microbiome to specific phenotypes and lifestyle
variables, data from different projects have been challenging to integrate and the extent of …

[HTML][HTML] Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission

…, ER Eisner, AL Lastrella, ES Lawrence, CA Marotz… - Nature, 2022 - nature.com
As SARS-CoV-2 continues to spread and evolve, detecting emerging variants early is critical
for public health interventions. Inferring lineage prevalence by clinical testing is infeasible …

[HTML][HTML] Establishing microbial composition measurement standards with reference frames

JT Morton, C Marotz, A Washburne, J Silverman… - Nature …, 2019 - nature.com
c An illustration of differential proportions of bacterial species before and after treatment.
d Same data as b but plotting the rank of the differentials, demonstrating that ranks are …

[HTML][HTML] Antibiotic-induced microbiome depletion alters metabolic homeostasis by affecting gut signaling and colonic metabolism

…, A Chaix, ZZ Xu, MW Chang, CA Marotz… - Nature …, 2018 - nature.com
… b, c Blood glucose concentration after IP injection of a glucose bolus (1 g/kg BW) (GTT) (b)
and area under the curve quantification (c). d Blood glucose levels after IP injection of insulin (…