[HTML][HTML] Pan-cancer whole-genome analyses of metastatic solid tumours

…, MP Lolkema, N Steeghs, E de Bruijn, C Shale… - Nature, 2019 - nature.com
… b, c, Cumulative distribution function plot (individual samples were ranked independently for
… SNVs and MNVs (b) and indels and SVs (c). The median for each tumour type is indicated …

[HTML][HTML] Laboratory characterisation of shale properties

M Josh, L Esteban, C Delle Piane, J Sarout… - Journal of Petroleum …, 2012 - Elsevier
… can detect water within most shale samples, even after they have been oven dried for 24
h at 100 C; less aggressively dried shale samples (eg 60 C and vacuum) have appreciable …

[HTML][HTML] GRIDSS2: comprehensive characterisation of somatic structural variation using single breakend variants and structural variant phasing

DL Cameron, J Baber, C Shale, JE Valle-Inclan… - Genome biology, 2021 - Springer
c Comparison of expected vs actual copy number changes for the Hartwig cohort. SV … c
Phasing of structural variants can be determined when breakend assembly contigs span multiple …

[HTML][HTML] Genetic immune escape landscape in primary and metastatic cancer

F Martínez-Jiménez, P Priestley, C Shale, J Baber… - Nature Genetics, 2023 - nature.com
… The HLA-I: somatic alterations in the HLA-A, HLA-B and HLA-C genes have been extensively
… We defined LOH for HLA-A, HLA-B and HLA-C as those cases with a minor allele ploidy <…

A review of the safety and efficacy of droperidol for the rapid sedation of severely agitated and violent patients

JH Shale, CM Shale, WD Mastin - Journal of Clinical Psychiatry, 2003 - psychiatrist.com
Shale), San Diego County Health and Human Services Agency (Mr. Mastin), San Diego;
and the Department of Surgery, Naval Medical Center San Diego, San Diego (Dr. C. Shale), …

[PDF][PDF] Unscrambling cancer genomes via integrated analysis of structural variation and copy number

C Shale, DL Cameron, J Baber, M Wong, MJ Cowley… - Cell Genomics, 2022 - cell.com
… Note that foldback inversions have a distinct length distribution and are shown separately
in Figure S4C. (C) Counts of deletions and duplications in complex clusters per sample both …

GRIDSS, PURPLE, LINX: Unscrambling the tumor genome via integrated analysis of structural variation and copy number

DL Cameron, J Baber, C Shale, AT Papenfuss… - BioRxiv, 2019 - biorxiv.org
We have developed a novel, integrated and comprehensive purity, ploidy, structural variant
and copy number somatic analysis toolkit for whole genome sequencing data of paired tumor…

[HTML][HTML] Complete genomic characterization in patients with cancer of unknown primary origin in routine diagnostics

…, LJW Bosch, F Lalezari, P Priestley, C Shale… - ESMO open, 2022 - Elsevier
Background In ∼3%-5% of patients with metastatic disease, tumor origin remains unknown
despite modern imaging techniques and extensive pathology work-up. With long diagnostic …

A nationwide review of the treatment patterns of traumatic thumb amputations

CM Shale, JE Tidwell III, RP Mulligan… - Annals of plastic …, 2013 - journals.lww.com
… Bell C. The Bridgewater Treatise. The Hand: Its Mechanism and Vital Endowments as
Evincing Design. … Shale, MD … Shale, MD …

New perspectives on the development of extrahepatic portosystemic shunts

RN White, C Shales, AT Parry - journal of small animal practice, 2017 - Wiley Online Library
In this essay we use clinical evidence and knowledge of anatomy to examine the relationship
between blood flow and formation of congenital extrahepatic portosystemic shunts in dogs …