[HTML][HTML] Traceability, reproducibility and wiki-exploration for “à-la-carte” reconstructions of genome-scale metabolic models
M Aite, M Chevallier, C Frioux, C Trottier… - PLoS computational …, 2018 - journals.plos.org
Genome-scale metabolic models have become the tool of choice for the global analysis of
microorganism metabolism, and their reconstruction has attained high standards of quality …
microorganism metabolism, and their reconstruction has attained high standards of quality …
Community‐level responses to iron availability in open ocean plankton ecosystems
…, A Tanaka, L Tirichine, C Trottier… - Global …, 2019 - Wiley Online Library
Predicting responses of plankton to variations in essential nutrients is hampered by limited
in situ measurements, a poor understanding of community composition, and the lack of …
in situ measurements, a poor understanding of community composition, and the lack of …
[HTML][HTML] Transcription factors in microalgae: genome-wide prediction and comparative analysis
S Thiriet-Rupert, G Carrier, B Chénais, C Trottier… - BMC genomics, 2016 - Springer
Background Studying transcription factors, which are some of the key players in gene
expression, is of outstanding interest for the investigation of the evolutionary history of organisms …
expression, is of outstanding interest for the investigation of the evolutionary history of organisms …
[HTML][HTML] Gut microbiota remodeling and intestinal adaptation to lipid malabsorption after enteroendocrine cell loss in adult mice
Background & Aims Enteroendocrine cells (EECs) and their hormones are essential
regulators of whole-body energy homeostasis. EECs sense luminal nutrients and microbial …
regulators of whole-body energy homeostasis. EECs sense luminal nutrients and microbial …
Scalable and exhaustive screening of metabolic functions carried out by microbial consortia
Motivation The selection of species exhibiting metabolic behaviors of interest is a challenging
step when switching from the investigation of a large microbiota to the study of functions …
step when switching from the investigation of a large microbiota to the study of functions …
The genome of Ectocarpus subulatus–A highly stress-tolerant brown alga
…, AF Peters, A Siegel, A Siméon, C Trottier… - Marine genomics, 2020 - Elsevier
Brown algae are multicellular photosynthetic stramenopiles that colonize marine rocky
shores worldwide. Ectocarpus sp. Ec32 has been established as a genomic model for brown …
shores worldwide. Ectocarpus sp. Ec32 has been established as a genomic model for brown …
[HTML][HTML] Genome-scale community modelling reveals conserved metabolic cross-feedings in epipelagic bacterioplankton communities
N Giordano, M Gaudin, C Trottier, E Delage… - Nature …, 2024 - nature.com
Marine microorganisms form complex communities of interacting organisms that influence
central ecosystem functions in the ocean such as primary production and nutrient cycling. …
central ecosystem functions in the ocean such as primary production and nutrient cycling. …
[HTML][HTML] Damage Localization on Composite Structures Based on the Delay-and-Sum Algorithm Using Simulation and Experimental Methods
…, S Montresor, N Colin, V Le Cam, C Trottier… - Sensors, 2023 - mdpi.com
Damage detection and localization based on ultrasonic guided waves revealed to be
promising for structural health monitoring and nondestructive testing. However, the use of a …
promising for structural health monitoring and nondestructive testing. However, the use of a …
[HTML][HTML] Identification of transcription factors involved in the phenotype of a domesticated oleaginous microalgae strain of Tisochrysis lutea
S Thiriet-Rupert, G Carrier, C Trottier, D Eveillard… - Algal research, 2018 - Elsevier
Microalgae are an outstanding source of high value products with applications in food, feed
or biofuel production. Among these promising organisms, the haptophyte Tisochrysis lutea is …
or biofuel production. Among these promising organisms, the haptophyte Tisochrysis lutea is …
Submersion time, depth, substrate type and sampling method as variation sources of marine periphyton
Periphyton is an additional food source in African and Asian brackish and freshwater fish
ponds. The present study was a preliminary assessment of periphyton development on artificial …
ponds. The present study was a preliminary assessment of periphyton development on artificial …