[HTML][HTML] Traceability, reproducibility and wiki-exploration for “à-la-carte” reconstructions of genome-scale metabolic models

M Aite, M Chevallier, C Frioux, C Trottier… - PLoS computational …, 2018 - journals.plos.org
Genome-scale metabolic models have become the tool of choice for the global analysis of
microorganism metabolism, and their reconstruction has attained high standards of quality …

Community‐level responses to iron availability in open ocean plankton ecosystems

…, A Tanaka, L Tirichine, C Trottier… - Global …, 2019 - Wiley Online Library
Predicting responses of plankton to variations in essential nutrients is hampered by limited
in situ measurements, a poor understanding of community composition, and the lack of …

[HTML][HTML] Transcription factors in microalgae: genome-wide prediction and comparative analysis

S Thiriet-Rupert, G Carrier, B Chénais, C Trottier… - BMC genomics, 2016 - Springer
Background Studying transcription factors, which are some of the key players in gene
expression, is of outstanding interest for the investigation of the evolutionary history of organisms …

[HTML][HTML] Gut microbiota remodeling and intestinal adaptation to lipid malabsorption after enteroendocrine cell loss in adult mice

…, S Jimenez, A Meunier, C Keime, C Trottier… - Cellular and Molecular …, 2023 - Elsevier
Background & Aims Enteroendocrine cells (EECs) and their hormones are essential
regulators of whole-body energy homeostasis. EECs sense luminal nutrients and microbial …

Scalable and exhaustive screening of metabolic functions carried out by microbial consortia

C Frioux, E Fremy, C Trottier, A Siegel - Bioinformatics, 2018 - academic.oup.com
Motivation The selection of species exhibiting metabolic behaviors of interest is a challenging
step when switching from the investigation of a large microbiota to the study of functions …

The genome of Ectocarpus subulatus–A highly stress-tolerant brown alga

…, AF Peters, A Siegel, A Siméon, C Trottier… - Marine genomics, 2020 - Elsevier
Brown algae are multicellular photosynthetic stramenopiles that colonize marine rocky
shores worldwide. Ectocarpus sp. Ec32 has been established as a genomic model for brown …

[HTML][HTML] Genome-scale community modelling reveals conserved metabolic cross-feedings in epipelagic bacterioplankton communities

N Giordano, M Gaudin, C Trottier, E Delage… - Nature …, 2024 - nature.com
Marine microorganisms form complex communities of interacting organisms that influence
central ecosystem functions in the ocean such as primary production and nutrient cycling. …

[HTML][HTML] Damage Localization on Composite Structures Based on the Delay-and-Sum Algorithm Using Simulation and Experimental Methods

…, S Montresor, N Colin, V Le Cam, C Trottier… - Sensors, 2023 - mdpi.com
Damage detection and localization based on ultrasonic guided waves revealed to be
promising for structural health monitoring and nondestructive testing. However, the use of a …

[HTML][HTML] Identification of transcription factors involved in the phenotype of a domesticated oleaginous microalgae strain of Tisochrysis lutea

S Thiriet-Rupert, G Carrier, C Trottier, D Eveillard… - Algal research, 2018 - Elsevier
Microalgae are an outstanding source of high value products with applications in food, feed
or biofuel production. Among these promising organisms, the haptophyte Tisochrysis lutea is …

Submersion time, depth, substrate type and sampling method as variation sources of marine periphyton

M Richard, C Trottier, MCJ Verdegem, JME Hussenot - Aquaculture, 2009 - Elsevier
Periphyton is an additional food source in African and Asian brackish and freshwater fish
ponds. The present study was a preliminary assessment of periphyton development on artificial …