User profiles for Can Keşmir
Can KesmirUtrecht University Verified email at uu.nl Cited by 9194 |
[HTML][HTML] The evolution of natural killer cell receptors
… But when cells have a decreased expression of MHC-I, which can occur during certain viral
infections or in tumors, they can become target for NK cell killing. The process by which NK …
infections or in tumors, they can become target for NK cell killing. The process by which NK …
Tumor exome analysis reveals neoantigen-specific T-cell reactivity in an ipilimumab-responsive melanoma
…, MR Stratton, RM Kerkhoven, C Keşmir… - Journal of Clinical …, 2013 - ascopubs.org
… To our knowledge, this is the first report to show how autologous cancer exome data can be
used to reveal T-cell responses against patient-specific neoantigens in humans. The ATR S>L …
used to reveal T-cell responses against patient-specific neoantigens in humans. The ATR S>L …
Evolutionary and immunological implications of contemporary HIV-1 variation
Evolutionary modelling studies indicate less than a century has passed since the most recent
common ancestor of the HIV-1 pandemic strains and, in that time frame, an extraordinarily …
common ancestor of the HIV-1 pandemic strains and, in that time frame, an extraordinarily …
[HTML][HTML] Properties of MHC class I presented peptides that enhance immunogenicity
T-cells have to recognize peptides presented on MHC molecules to be activated and elicit
their effector functions. Several studies demonstrate that some peptides are more …
their effector functions. Several studies demonstrate that some peptides are more …
The role of the proteasome in generating cytotoxic T-cell epitopes: insights obtained from improved predictions of proteasomal cleavage
… First, we will demonstrate how the predictive performance can be … In this way, we can
directly point out the source of … (2) Can one find signs of adaptation between the specificity …
directly point out the source of … (2) Can one find signs of adaptation between the specificity …
Prediction of proteasome cleavage motifs by neural networks
C Keşmir, AK Nussbaum, H Schild, V Detours… - Protein …, 2002 - academic.oup.com
We present a predictive method that can simulate an essential step in the antigen
presentation in higher vertebrates, namely the step involving the proteasomal degradation of …
presentation in higher vertebrates, namely the step involving the proteasomal degradation of …
Modeling the adaptive immune system: predictions and simulations
… can be classified into two types: humoral immunity, mediated by antibodies, which are secreted
by B lymphocytes and can … functions independently and can be recombinantly produced …
by B lymphocytes and can … functions independently and can be recombinantly produced …
[BOOK][B] Immunological bioinformatics
… can recognize antigens in their native form, we also show how structural information of a
protein can … Chapter 14 explains how all the methods described in this book can be integrated …
protein can … Chapter 14 explains how all the methods described in this book can be integrated …
Predicted indirectly recognizable HLA epitopes presented by HLA-DR correlate with the de novo development of donor-specific HLA IgG antibodies after kidney …
HG Otten, JJA Calis, C Keşmir, AD van Zuilen… - Human immunology, 2013 - Elsevier
BACKGROUND: HLA class-I mismatches selectively induce antibody formation after kidney
transplantation. The de novo development of donor-specific IgG HLA class-I antibodies may …
transplantation. The de novo development of donor-specific IgG HLA class-I antibodies may …
[HTML][HTML] Evolution of SARS-CoV-2-specific CD4+ T cell epitopes
M Brand, C Keşmir - Immunogenetics, 2023 - Springer
Vaccination clearly decreases coronavirus disease 2019 (COVID-19) mortality; however,
they also impose selection pressure on the virus, which promotes the evolution of immune …
they also impose selection pressure on the virus, which promotes the evolution of immune …