User profiles for Can Keşmir

Can Kesmir

Utrecht University
Verified email at uu.nl
Cited by 9194

[HTML][HTML] The evolution of natural killer cell receptors

P Carrillo-Bustamante, C Keşmir, RJ de Boer - Immunogenetics, 2016 - Springer
… But when cells have a decreased expression of MHC-I, which can occur during certain viral
infections or in tumors, they can become target for NK cell killing. The process by which NK …

Tumor exome analysis reveals neoantigen-specific T-cell reactivity in an ipilimumab-responsive melanoma

…, MR Stratton, RM Kerkhoven, C Keşmir… - Journal of Clinical …, 2013 - ascopubs.org
… To our knowledge, this is the first report to show how autologous cancer exome data can be
used to reveal T-cell responses against patient-specific neoantigens in humans. The ATR S>L …

Evolutionary and immunological implications of contemporary HIV-1 variation

…, K Yusim, R Thakallapally, C Kesmir… - British medical …, 2001 - academic.oup.com
Evolutionary modelling studies indicate less than a century has passed since the most recent
common ancestor of the HIV-1 pandemic strains and, in that time frame, an extraordinarily …

[HTML][HTML] Properties of MHC class I presented peptides that enhance immunogenicity

…, AD De Silva, A Sette, C Keşmir… - PLoS computational …, 2013 - journals.plos.org
T-cells have to recognize peptides presented on MHC molecules to be activated and elicit
their effector functions. Several studies demonstrate that some peptides are more …

The role of the proteasome in generating cytotoxic T-cell epitopes: insights obtained from improved predictions of proteasomal cleavage

M Nielsen, C Lundegaard, O Lund, C Keşmir - Immunogenetics, 2005 - Springer
… First, we will demonstrate how the predictive performance can be … In this way, we can
directly point out the source of … (2) Can one find signs of adaptation between the specificity …

Prediction of proteasome cleavage motifs by neural networks

C Keşmir, AK Nussbaum, H Schild, V Detours… - Protein …, 2002 - academic.oup.com
We present a predictive method that can simulate an essential step in the antigen
presentation in higher vertebrates, namely the step involving the proteasomal degradation of …

Modeling the adaptive immune system: predictions and simulations

C Lundegaard, O Lund, C Keşmir, S Brunak… - …, 2007 - academic.oup.com
can be classified into two types: humoral immunity, mediated by antibodies, which are secreted
by B lymphocytes and can … functions independently and can be recombinantly produced …

[BOOK][B] Immunological bioinformatics

O Lund, M Nielsen, C Lundegaard, C Kesmir, S Brunak - 2005 - books.google.com
can recognize antigens in their native form, we also show how structural information of a
protein can … Chapter 14 explains how all the methods described in this book can be integrated …

Predicted indirectly recognizable HLA epitopes presented by HLA-DR correlate with the de novo development of donor-specific HLA IgG antibodies after kidney …

HG Otten, JJA Calis, C Keşmir, AD van Zuilen… - Human immunology, 2013 - Elsevier
BACKGROUND: HLA class-I mismatches selectively induce antibody formation after kidney
transplantation. The de novo development of donor-specific IgG HLA class-I antibodies may …

[HTML][HTML] Evolution of SARS-CoV-2-specific CD4+ T cell epitopes

M Brand, C Keşmir - Immunogenetics, 2023 - Springer
Vaccination clearly decreases coronavirus disease 2019 (COVID-19) mortality; however,
they also impose selection pressure on the virus, which promotes the evolution of immune …