Bio-Docklets: virtualization containers for single-step execution of NGS pipelines

B Kim, T Ali, C Lijeron, E Afgan, K Krampis - Gigascience, 2017 - academic.oup.com
Processing of next-generation sequencing (NGS) data requires significant technical skills,
involving installation, configuration, and execution of bioinformatics data pipelines, in addition …

MGS-Fast: Metagenomic shotgun data fast annotation using microbial gene catalogs

…, Y Hao, BP Laungani, TA Ali, C Dong, C Lijeron… - …, 2019 - academic.oup.com
Background Current methods used for annotating metagenomics shotgun sequencing (MGS)
data rely on a computationally intensive and low-stringency approach of mapping each …

miCloud: A Plug-n-Play, Extensible, On-Premises Bioinformatics Cloud for Seamless Execution of Complex Next-Generation Sequencing Data Analysis Pipelines

B Kim, T Ali, C Dong, C Lijeron… - Journal of …, 2019 - liebertpub.com
The availability of low-cost small-factor sequencers, such as the Illumina MiSeq, MiniSeq, or
iSeq, have paved the way for democratizing genomics sequencing, providing researchers in …

Fast functional annotation of metagenomic shotgun data by DNA alignment to a microbial gene catalog

…, H Chen, BP Laungani, TA Ali, C Dong, C Lijeron… - bioRxiv, 2017 - biorxiv.org
Background Metagenomic shotgun sequencing is becoming increasingly popular to study
microbes associated with the human body and in environmental samples. A key goal of …

miCloud: a plug and play, on-premises bioinformatics cloud, providing seamless integration with Illumina genome sequencers

…, K Krampis, C Dong, B Laungani, C Wultsch, C Lijeron - bioRxiv, 2017 - biorxiv.org
Benchtop genome sequencers such as the Illumina MiSeq or MiniSeq [ 1 ], [ 2 ] are revolutionizing
genomics research for smaller, independent laboratories, by enabling access to low-…

TED toolkit: a comprehensive approach for convenient transcriptomic profiling as a clinically-oriented application

T Ali, B Kim, C Lijeron, OO Ogunwobi, R Mazumder… - 2017 - peerj.com
In translational medicine, the technology of RNA sequencing (RNA-seq) continues to prove
powerful, and transforming the RNA-seq data into biological insights has become …

[BOOK][B] Convergent Evolution of Biochemical Innovations in Polychaetes: Characterizing the Molecular Basis of Bioluminescence and Venom Production

AEV Gorín - 2018 - search.proquest.com
… Many thanks as well to all the great collaborators, specially Carlos Lijeron who has been
always there to help with any bioinformatics problem Ive had, gracias de corazn Carlos. …

Are fireworms venomous? Evidence for the convergent evolution of toxin homologs in three species of fireworms (Annelida, Amphinomidae)

A Verdes, D Simpson, M Holford - Genome biology and …, 2018 - academic.oup.com
Amphinomids, more commonly known as fireworms, are a basal lineage of marine annelids
characterized by the presence of defensive dorsal calcareous chaetae, which break off upon …

[BOOK][B] Reciprocal teaching of metacognitive strategies to strengthen reading comprehension of high school students in Spanish: A descriptive case study

JT Lijeron - 1993 - search.proquest.com
INFORMATION TO USERS Page 1 INFORMATION TO USERS This manuscript has been
reproduced from the microfilm master. UMI films the text directly from the original or copy …

Bolivian Government Approves Extradition Of Drug Trafficking Suspect To US

E Harding - 1992 - digitalrepository.unm.edu
… of what she described as conversations between Rosales Lijeron and her client's relatives.
… Rosales Lijeron was to receive US$120,000, and the other justices, US$50,000 each. After …