User profiles for Carlos Oliver

Carlos Oliver

Max Planck Institute of Biochemistry
Verified email at biochem.mpg.de
Cited by 210

OptiMol: Optimization of Binding Affinities in Chemical Space for Drug Discovery

J Boitreaud, V Mallet, C Oliver… - Journal of Chemical …, 2020 - ACS Publications
Ligand-based drug design has recently benefited from the development of deep generative
models. These models enable extensive explorations of the chemical space and provide a …

ProteinShake: Building datasets and benchmarks for deep learning on protein structures

T Kucera, C Oliver, D Chen… - Advances in Neural …, 2024 - proceedings.neurips.cc
We present ProteinShake, a Python software package that simplifies datasetcreation and
model evaluation for deep learning on protein structures. Users cancreate custom datasets or …

Augmented base pairing networks encode RNA-small molecule binding preferences

C Oliver, V Mallet, RS Gendron, V Reinharz… - Nucleic acids …, 2020 - academic.oup.com
RNA-small molecule binding is a key regulatory mechanism which can stabilize 3D structures
and activate molecular functions. The discovery of RNA-targeting compounds is thus a …

Obstacles influence on existing urban canyon ventilation and air pollutant concentration: A review of potential measures

R Buccolieri, OS Carlo, E Rivas, JL Santiago… - Building and …, 2022 - Elsevier
Air pollution in cities, especially in existing urban canyons, poses a global significant long-term
health risk to the urban population, and urban planners are faced with the challenge of …

Vernal: a tool for mining fuzzy network motifs in RNA

C Oliver, V Mallet, P Philippopoulos… - …, 2022 - academic.oup.com
… The authors wish it to be known that, in their opinion, the Carlos Oliver and Vincent Mallet …
The authors wish it to be known that, in their opinion, the Carlos Oliver and Vincent Mallet …

RNAglib: a python package for RNA 2.5 D graphs

V Mallet, C Oliver, J Broadbent, WL Hamilton… - …, 2022 - academic.oup.com
RNA 3D architectures are stabilized by sophisticated networks of (non-canonical) base pair
interactions, which can be conveniently encoded as multi-relational graphs and efficiently …

Skeletal structure, growth, and paleoecology of the patch reef-buildingpolychaete worm Diplochaetetes mexicanus wilson, 1986 from the oligocene of baja california …

R Fischer, CG Oliver, J Reitner - Geobios, 1989 - Elsevier
Worm reeflets discribed here are composed of parallel and straight, curved, or bifurcated
tubes, which are up to 10 cm long and have an average diameter of 1.4 mm. Their walls are …

Stochastic sampling of structural contexts improves the scalability and accuracy of RNA 3d module identification

…, HT Yao, V Reinharz, CG Oliver… - … on Research in …, 2020 - Springer
RNA structures possess multiple levels of structural organization. Secondary structures are
made of canonical (ie Watson-Crick and Wobble) helices, connected by loops whose local …

Automated, customizable and efficient identification of 3D base pair modules with BayesPairing

R Sarrazin-Gendron, V Reinharz, CG Oliver… - Nucleic acids …, 2019 - academic.oup.com
RNA structures possess multiple levels of structural organization. A secondary structure, made
of Watson–Crick helices connected by loops, forms a scaffold for the tertiary structure. The …

[HTML][HTML] Analysis of urban greening scenarios for improving outdoor thermal comfort in neighbourhoods of Lecce (Southern Italy)

E Gatto, F Ippolito, G Rispoli, OS Carlo, JL Santiago… - Climate, 2021 - mdpi.com
This study analyses the interactions and impacts between multiple factors ie, urban greening,
building layout, and meteorological conditions that characterise the urban microclimate …