User profiles for Carlos Outeiral

Carlos Outeiral

Eric and Wendy Schmidt AI in Science Postdoctoral Fellow
Verified email at stats.ox.ac.uk
Cited by 1373

The prospects of quantum computing in computational molecular biology

C Outeiral, M Strahm, J Shi, GM Morris… - Wiley …, 2021 - Wiley Online Library
Quantum computers can in principle solve certain problems exponentially more quickly than
their classical counterparts. We have not yet reached the advent of useful quantum …

Current structure predictors are not learning the physics of protein folding

C Outeiral, DA Nissley, CM Deane - Bioinformatics, 2022 - academic.oup.com
Motivation. Predicting the native state of a protein has long been considered a gateway
problem for understanding protein folding. Recent advances in structural modeling driven by …

Optimizing distributions over molecular space. An objective-reinforced generative adversarial network for inverse-design chemistry (ORGANIC)

B Sanchez-Lengeling, C Outeiral, GL Guimaraes… - 2017 - chemrxiv.org
Molecular discovery seeks to generate chemical species tailored to very specific needs. In
this paper, we present ORGANIC, a framework based on Objective-Reinforced Generative …

Objective-reinforced generative adversarial networks (organ) for sequence generation models

…, B Sanchez-Lengeling, C Outeiral… - arXiv preprint arXiv …, 2017 - arxiv.org
In unsupervised data generation tasks, besides the generation of a sample based on
previous observations, one would often like to give hints to the model in order to bias the …

[HTML][HTML] Revitalizing the concept of bond order through delocalization measures in real space

C Outeiral, MA Vincent, ÁM Pendás, PLA Popelier - Chemical science, 2018 - pubs.rsc.org
Ab initio quantum chemistry is an independent source of information supplying an ever
widening group of experimental chemists. However, bridging the gap between these ab initio …

Membranome 3.0: Database of single‐pass membrane proteins with AlphaFold models

…, SC Todd, S Cherepanov, C Outeiral… - Protein …, 2022 - Wiley Online Library
The Membranome database provides comprehensive structural information on single‐pass (ie,
bitopic) membrane proteins from six evolutionarily distant organisms, including protein–…

[HTML][HTML] Codon language embeddings provide strong signals for use in protein engineering

C Outeiral, CM Deane - Nature Machine Intelligence, 2024 - nature.com
Protein representations from deep language models have yielded state-of-the-art performance
across many tasks in computational protein engineering. In recent years, progress has …

[HTML][HTML] Discovery and pharmacophoric characterization of chemokine network inhibitors using phage-display, saturation mutagenesis and computational modelling

…, P Mburu, S Denisov, G Davies, C Outeiral… - Nature …, 2023 - nature.com
CC and CXC-chemokines are the primary drivers of chemotaxis in inflammation, but chemokine
network redundancy thwarts pharmacological intervention. Tick evasins promiscuously …

Generative artificial intelligence for de novo protein design

A Winnifrith, C Outeiral, B Hie - arXiv preprint arXiv:2310.09685, 2023 - arxiv.org
Engineering new molecules with desirable functions and properties has the potential to extend
our ability to engineer proteins beyond what nature has so far evolved. Advances in the …

Perfecting antibodies with language models

C Outeiral, CM Deane - Nature Biotechnology, 2024 - nature.com
Carlos OuteiralCarlos Outeiral & Charlotte M. Deane … Carlos Outeiral