User profiles for Caroline Hoppe
Caroline HoppeYale University Verified email at yale.edu Cited by 488 |
The dark matter of the cancer genome: aberrations in regulatory elements, untranslated regions, splice sites, non‐coding RNA and synonymous mutations
…, K Fröse, J Heitmann, C Hoppe… - EMBO molecular …, 2016 - embopress.org
Cancer is a disease of the genome caused by oncogene activation and tumor suppressor
gene inhibition. Deep sequencing studies including large consortia such as TCGA and ICGC …
gene inhibition. Deep sequencing studies including large consortia such as TCGA and ICGC …
[PDF][PDF] The NHR-8 nuclear receptor regulates cholesterol and bile acid homeostasis in C. elegans
DB Magner, J Wollam, Y Shen, C Hoppe, D Li, C Latza… - Cell metabolism, 2013 - cell.com
Hormone-gated nuclear receptors (NRs) are conserved transcriptional regulators of metabolism,
reproduction, and homeostasis. Here we show that C. elegans NHR-8 NR, a homolog …
reproduction, and homeostasis. Here we show that C. elegans NHR-8 NR, a homolog …
[PDF][PDF] Modulation of the promoter activation rate dictates the transcriptional response to graded BMP signaling levels in the Drosophila embryo
C Hoppe, JR Bowles, TG Minchington, C Sutcliffe… - Developmental cell, 2020 - cell.com
Morphogen gradients specify cell fates during development, with a classic example being
the bone morphogenetic protein (BMP) gradient's conserved role in embryonic dorsal-ventral …
the bone morphogenetic protein (BMP) gradient's conserved role in embryonic dorsal-ventral …
Dynamics of hunchback translation in real-time and at single-mRNA resolution in the Drosophila embryo
DJ Vinter, C Hoppe, TG Minchington… - …, 2021 - journals.biologists.com
The Hunchback (Hb) transcription factor is crucial for anterior-posterior patterning of the
Drosophila embryo. The maternal hb mRNA acts as a paradigm for translational regulation due …
Drosophila embryo. The maternal hb mRNA acts as a paradigm for translational regulation due …
[HTML][HTML] CRISPR-Cas9 strategies to insert MS2 stem-loops into endogenous loci in Drosophila embryos
C Hoppe, HL Ashe - STAR protocols, 2021 - Elsevier
CRISPR-Cas9 genome editing has transformed biology by enabling site-specific genome
modifications to be simply engineered. Here, we describe two CRISPR-Cas9 approaches to …
modifications to be simply engineered. Here, we describe two CRISPR-Cas9 approaches to …
[HTML][HTML] Live imaging and quantitation of nascent transcription using the MS2/MCP system in the Drosophila embryo
C Hoppe, HL Ashe - STAR protocols, 2021 - Elsevier
Visualizing transcription live in Drosophila is providing important new insights into the
spatiotemporal regulation of transcription. Here, we describe a protocol to visualize and quantitate …
spatiotemporal regulation of transcription. Here, we describe a protocol to visualize and quantitate …
Scalable inference of transcriptional kinetic parameters from MS2 time series data
Motivation The MS2-MCP (MS2 coat protein) live imaging system allows for visualization of
transcription dynamics through the introduction of hairpin stem-loop sequences into a gene. …
transcription dynamics through the introduction of hairpin stem-loop sequences into a gene. …
[HTML][HTML] Live and fixed imaging of translation sites at single mRNA resolution in the Drosophila embryo
DJ Vinter, C Hoppe, HL Ashe - STAR protocols, 2021 - Elsevier
Significant regulation of gene expression is mediated at the translation level. Here, we describe
protocols for imaging and analysis of translation at single mRNA resolution in both fixed …
protocols for imaging and analysis of translation at single mRNA resolution in both fixed …
Widowed and married: comparative change in living arrangements, 1900 and 1980
TB Heaton, C Hoppe - Social Science History, 1987 - cambridge.org
It has become clear that the onset of widowhood, perhaps more than any other event of the
aging process, involves a dramatic change in the family status of older persons. Because …
aging process, involves a dramatic change in the family status of older persons. Because …
Genetically encoded affinity reagents (GEARs): A toolkit for visualizing and manipulating endogenous protein function in vivo.
Probing endogenous protein localization and function in vivo remains challenging due to
laborious gene targeting and monofunctional alleles. Here, we develop a multifunctional, …
laborious gene targeting and monofunctional alleles. Here, we develop a multifunctional, …