User profiles for Caroline Hoppe

Caroline Hoppe

Yale University
Verified email at yale.edu
Cited by 488

The dark matter of the cancer genome: aberrations in regulatory elements, untranslated regions, splice sites, non‐coding RNA and synonymous mutations

…, K Fröse, J Heitmann, C Hoppe… - EMBO molecular …, 2016 - embopress.org
Cancer is a disease of the genome caused by oncogene activation and tumor suppressor
gene inhibition. Deep sequencing studies including large consortia such as TCGA and ICGC …

[PDF][PDF] The NHR-8 nuclear receptor regulates cholesterol and bile acid homeostasis in C. elegans

DB Magner, J Wollam, Y Shen, C Hoppe, D Li, C Latza… - Cell metabolism, 2013 - cell.com
Hormone-gated nuclear receptors (NRs) are conserved transcriptional regulators of metabolism,
reproduction, and homeostasis. Here we show that C. elegans NHR-8 NR, a homolog …

[PDF][PDF] Modulation of the promoter activation rate dictates the transcriptional response to graded BMP signaling levels in the Drosophila embryo

C Hoppe, JR Bowles, TG Minchington, C Sutcliffe… - Developmental cell, 2020 - cell.com
Morphogen gradients specify cell fates during development, with a classic example being
the bone morphogenetic protein (BMP) gradient's conserved role in embryonic dorsal-ventral …

Dynamics of hunchback translation in real-time and at single-mRNA resolution in the Drosophila embryo

DJ Vinter, C Hoppe, TG Minchington… - …, 2021 - journals.biologists.com
The Hunchback (Hb) transcription factor is crucial for anterior-posterior patterning of the
Drosophila embryo. The maternal hb mRNA acts as a paradigm for translational regulation due …

[HTML][HTML] CRISPR-Cas9 strategies to insert MS2 stem-loops into endogenous loci in Drosophila embryos

C Hoppe, HL Ashe - STAR protocols, 2021 - Elsevier
CRISPR-Cas9 genome editing has transformed biology by enabling site-specific genome
modifications to be simply engineered. Here, we describe two CRISPR-Cas9 approaches to …

[HTML][HTML] Live imaging and quantitation of nascent transcription using the MS2/MCP system in the Drosophila embryo

C Hoppe, HL Ashe - STAR protocols, 2021 - Elsevier
Visualizing transcription live in Drosophila is providing important new insights into the
spatiotemporal regulation of transcription. Here, we describe a protocol to visualize and quantitate …

Scalable inference of transcriptional kinetic parameters from MS2 time series data

JR Bowles, C Hoppe, HL Ashe, M Rattray - Bioinformatics, 2022 - academic.oup.com
Motivation The MS2-MCP (MS2 coat protein) live imaging system allows for visualization of
transcription dynamics through the introduction of hairpin stem-loop sequences into a gene. …

[HTML][HTML] Live and fixed imaging of translation sites at single mRNA resolution in the Drosophila embryo

DJ Vinter, C Hoppe, HL Ashe - STAR protocols, 2021 - Elsevier
Significant regulation of gene expression is mediated at the translation level. Here, we describe
protocols for imaging and analysis of translation at single mRNA resolution in both fixed …

Widowed and married: comparative change in living arrangements, 1900 and 1980

TB Heaton, C Hoppe - Social Science History, 1987 - cambridge.org
It has become clear that the onset of widowhood, perhaps more than any other event of the
aging process, involves a dramatic change in the family status of older persons. Because …

Genetically encoded affinity reagents (GEARs): A toolkit for visualizing and manipulating endogenous protein function in vivo.

CW Boswell, C Hoppe, A Sherrard, L Miao, ML Kojima… - bioRxiv, 2023 - biorxiv.org
Probing endogenous protein localization and function in vivo remains challenging due to
laborious gene targeting and monofunctional alleles. Here, we develop a multifunctional, …