Prophage genomics

C Canchaya, C Proux, G Fournous… - Microbiology and …, 2003 - Am Soc Microbiol
The majority of the bacterial genome sequences deposited in the National Center for
Biotechnology Information database contain prophage sequences. Analysis of the prophages …

[HTML][HTML] Analysis of the Genome and Transcriptome of Cryptococcus neoformans var. grubii Reveals Complex RNA Expression and Microevolution Leading to …

…, PA Mieczkowski, F Moyrand, K Nielsen, C Proux… - PLoS …, 2014 - journals.plos.org
Cryptococcus neoformans is a pathogenic basidiomycetous yeast responsible for more than
600,000 deaths each year. It occurs as two serotypes (A and D) representing two varieties (…

Arabidopsis FIERY1, XRN2, and XRN3 Are Endogenous RNA Silencing Suppressors

…, JB Morel, J Gombert, F Proux, C Proux… - The Plant …, 2007 - academic.oup.com
The eukaryotic defense response posttranscriptional gene silencing (PTGS) is directed by
short-interfering RNAs and thwarts invading nucleic acids via the RNA slicing activity of …

[PDF][PDF] The histone H3 lysine 9 methyltransferases G9a and GLP regulate polycomb repressive complex 2-mediated gene silencing

…, J Pontis, L Fritsch, P Robin, M Portoso, C Proux… - Molecular cell, 2014 - cell.com
G9a/GLP and Polycomb Repressive Complex 2 (PRC2) are two major epigenetic silencing
machineries, which in particular methylate histone H3 on lysines 9 and 27 (H3K9 and H3K27)…

[PDF][PDF] In situ fixation redefines quiescence and early activation of skeletal muscle stem cells

L Machado, JE de Lima, O Fabre, C Proux, R Legendre… - Cell reports, 2017 - cell.com
State of the art techniques have been developed to isolate and analyze cells from various
tissues, aiming to capture their in vivo state. However, the majority of cell isolation protocols …

A coumaroyl-ester-3-hydroxylase Insertion Mutant Reveals the Existence of Nonredundant meta-Hydroxylation Pathways and Essential Roles for Phenolic …

…, K Larsen, C Asnaghi, S Ronseau, C Proux… - Plant …, 2006 - academic.oup.com
Cytochromes P450 monooxygenases from the CYP98 family catalyze the meta-hydroxylation
step in the phenylpropanoid biosynthetic pathway. The ref8 Arabidopsis (Arabidopsis …

[HTML][HTML] Structure, Function, and Evolution of the Thiomonas spp. Genome

…, C Michel, D Muller, P Ortet, C Proux… - PLoS …, 2010 - journals.plos.org
Bacteria of the Thiomonas genus are ubiquitous in extreme environments, such as arsenic-rich
acid mine drainage (AMD). The genome of one of these strains, Thiomonas sp. 3As, was …

Mitotic binding of Esrrb marks key regulatory regions of the pluripotency network

…, A Mouren, S Bessonnard, F Mueller, C Proux… - Nature cell …, 2016 - nature.com
Pluripotent mouse embryonic stem cells maintain their identity throughout virtually infinite
cell divisions. This phenomenon, referred to as self-renewal, depends on a network of …

[HTML][HTML] ATM-Mediated Transcriptional and Developmental Responses to γ-rays in Arabidopsis

L Ricaud, C Proux, JP Renou, O Pichon, S Fochesato… - PloS one, 2007 - journals.plos.org
ATM (Ataxia Telangiectasia Mutated) is an essential checkpoint kinase that signals DNA
double-strand breaks in eukaryotes. Its depletion causes meiotic and somatic defects in …

The Dilemma of Phage Taxonomy Illustrated by Comparative Genomics of Sfi21-Like Siphoviridae in Lactic Acid Bacteria

C Proux, D van Sinderen, J Suarez, P Garcia… - Journal of …, 2002 - Am Soc Microbiol
The complete genome sequences of two dairy phages, Streptococcus thermophilus phage
7201 and Lactobacillus casei phage A2, are reported. Comparative genomics reveals that …