User profiles for Carrie D. Nicora
Carrie NicoraPacific Northwest National Laboratory Verified email at pnnl.gov Cited by 7321 |
Transport functions dominate the SAR11 metaproteome at low-nutrient extremes in the Sargasso Sea
The northwestern Sargasso Sea undergoes annual cycles of productivity with increased
production in spring corresponding to periods of upwelling, and oligotrophy in summer and …
production in spring corresponding to periods of upwelling, and oligotrophy in summer and …
Genome-centric view of carbon processing in thawing permafrost
As global temperatures rise, large amounts of carbon sequestered in permafrost are becoming
available for microbial degradation. Accurate prediction of carbon gas emissions from …
available for microbial degradation. Accurate prediction of carbon gas emissions from …
[PDF][PDF] Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase II
TS Ream, JR Haag, AT Wierzbicki, CD Nicora… - Molecular cell, 2009 - cell.com
In addition to RNA polymerases I, II, and III, the essential RNA polymerases present in all
eukaryotes, plants have two additional nuclear RNA polymerases, abbreviated as Pol IV and …
eukaryotes, plants have two additional nuclear RNA polymerases, abbreviated as Pol IV and …
[PDF][PDF] In vitro transcription activities of Pol IV, Pol V, and RDR2 reveal coupling of Pol IV and RDR2 for dsRNA synthesis in plant RNA silencing
JR Haag, TS Ream, M Marasco, CD Nicora… - Molecular cell, 2012 - cell.com
In Arabidopsis, RNA-dependent DNA methylation and transcriptional silencing involves
three nuclear RNA polymerases that are biochemically undefined: the presumptive DNA-…
three nuclear RNA polymerases that are biochemically undefined: the presumptive DNA-…
MERS-CoV and H5N1 influenza virus antagonize antigen presentation by altering the epigenetic landscape
…, AJ Eisfeld, KB Walters, CD Nicora… - Proceedings of the …, 2018 - National Acad Sciences
Convergent evolution dictates that diverse groups of viruses will target both similar and distinct
host pathways to manipulate the immune response and improve infection. In this study, …
host pathways to manipulate the immune response and improve infection. In this study, …
Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer
Fermentation-based metabolism is an important ecosystem function often associated with
environments rich in organic carbon, such as wetlands, sewage sludge and the mammalian …
environments rich in organic carbon, such as wetlands, sewage sludge and the mammalian …
MPLEx: a robust and universal protocol for single-sample integrative proteomic, metabolomic, and lipidomic analyses
ES Nakayasu, CD Nicora, AC Sims… - …, 2016 - Am Soc Microbiol
Integrative multi-omics analyses can empower more effective investigation and complete
understanding of complex biological systems. Despite recent advances in a range of omics …
understanding of complex biological systems. Despite recent advances in a range of omics …
Auto-deconvolution and molecular networking of gas chromatography–mass spectrometry data
…, SP Couvillion, MC Burnet, CD Nicora… - Nature …, 2021 - nature.com
We engineered a machine learning approach, MSHub, to enable auto-deconvolution of gas
chromatography–mass spectrometry (GC–MS) data. We then designed workflows to enable …
chromatography–mass spectrometry (GC–MS) data. We then designed workflows to enable …
Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens
Herbivores gain access to nutrients stored in plant biomass largely by harnessing the metabolic
activities of microbes. Leaf-cutter ants of the genus Atta are a hallmark example; these …
activities of microbes. Leaf-cutter ants of the genus Atta are a hallmark example; these …
Conservation of protein abundance patterns reveals the regulatory architecture of the EGFR-MAPK pathway
Various genetic mutations associated with cancer are known to alter cell signaling, but it is
not clear whether they dysregulate signaling pathways by altering the abundance of pathway …
not clear whether they dysregulate signaling pathways by altering the abundance of pathway …