User profiles for Carrie D. Nicora

Carrie Nicora

Pacific Northwest National Laboratory
Verified email at pnnl.gov
Cited by 7321

Transport functions dominate the SAR11 metaproteome at low-nutrient extremes in the Sargasso Sea

…, AD Norbeck, MS Lipton, CD Nicora… - The ISME …, 2009 - academic.oup.com
The northwestern Sargasso Sea undergoes annual cycles of productivity with increased
production in spring corresponding to periods of upwelling, and oligotrophy in summer and …

Genome-centric view of carbon processing in thawing permafrost

…, SB Hodgkins, RM Wilson, SO Purvine, CD Nicora… - Nature, 2018 - nature.com
As global temperatures rise, large amounts of carbon sequestered in permafrost are becoming
available for microbial degradation. Accurate prediction of carbon gas emissions from …

[PDF][PDF] Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase II

TS Ream, JR Haag, AT Wierzbicki, CD Nicora… - Molecular cell, 2009 - cell.com
In addition to RNA polymerases I, II, and III, the essential RNA polymerases present in all
eukaryotes, plants have two additional nuclear RNA polymerases, abbreviated as Pol IV and …

[PDF][PDF] In vitro transcription activities of Pol IV, Pol V, and RDR2 reveal coupling of Pol IV and RDR2 for dsRNA synthesis in plant RNA silencing

JR Haag, TS Ream, M Marasco, CD Nicora… - Molecular cell, 2012 - cell.com
In Arabidopsis, RNA-dependent DNA methylation and transcriptional silencing involves
three nuclear RNA polymerases that are biochemically undefined: the presumptive DNA-…

MERS-CoV and H5N1 influenza virus antagonize antigen presentation by altering the epigenetic landscape

…, AJ Eisfeld, KB Walters, CD Nicora… - Proceedings of the …, 2018 - National Acad Sciences
Convergent evolution dictates that diverse groups of viruses will target both similar and distinct
host pathways to manipulate the immune response and improve infection. In this study, …

Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer

…, KM Handley, SW Mullin, CD Nicora… - The ISME …, 2014 - academic.oup.com
Fermentation-based metabolism is an important ecosystem function often associated with
environments rich in organic carbon, such as wetlands, sewage sludge and the mammalian …

MPLEx: a robust and universal protocol for single-sample integrative proteomic, metabolomic, and lipidomic analyses

ES Nakayasu, CD Nicora, AC Sims… - …, 2016 - Am Soc Microbiol
Integrative multi-omics analyses can empower more effective investigation and complete
understanding of complex biological systems. Despite recent advances in a range of omics …

Auto-deconvolution and molecular networking of gas chromatography–mass spectrometry data

…, SP Couvillion, MC Burnet, CD Nicora… - Nature …, 2021 - nature.com
We engineered a machine learning approach, MSHub, to enable auto-deconvolution of gas
chromatography–mass spectrometry (GC–MS) data. We then designed workflows to enable …

Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens

…, SG Tringe, SM Adams, KW Barry, CD Nicora… - The ISME …, 2012 - academic.oup.com
Herbivores gain access to nutrients stored in plant biomass largely by harnessing the metabolic
activities of microbes. Leaf-cutter ants of the genus Atta are a hallmark example; these …

Conservation of protein abundance patterns reveals the regulatory architecture of the EGFR-MAPK pathway

T Shi, M Niepel, JE McDermott, Y Gao, CD Nicora… - Science …, 2016 - science.org
Various genetic mutations associated with cancer are known to alter cell signaling, but it is
not clear whether they dysregulate signaling pathways by altering the abundance of pathway …