User profiles for Casey M. Bergman

Casey Bergman

Associate Professor, Department of Genetics & Institute of Bioinformatics, University of …
Verified email at uga.edu
Cited by 13677

[HTML][HTML] Evolution of genes and genomes on the Drosophila phylogeny

AG Clark, MB Eisen, DR Smith, CM Bergman, B Oliver… - Nature, 2007 - hal.science
Comparative analysis of multiple genomes in a phylogenetic framework dramatically improves
the precision and sensitivity of evolutionary inference, producing more robust results than …

[HTML][HTML] The Drosophila melanogaster Genetic Reference Panel

…, KC Worley, YQ Wu, A Yamamoto, Y Zhu, CM Bergman… - Nature, 2012 - nature.com
A major challenge of biology is understanding the relationship between molecular genetic
variation and variation in quantitative traits, including fitness. This relationship determines our …

Population genomics of domestic and wild yeasts

…, A Burt, V Koufopanou, IJ Tsai, CM Bergman… - Nature, 2009 - nature.com
Since the completion of the genome sequence of Saccharomyces cerevisiae in 1996 (refs 1
), there has been a large increase in complete genome sequences, accompanied by great …

[HTML][HTML] The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective

JS Kaminker, CM Bergman, B Kronmiller, J Carlson… - Genome biology, 2002 - Springer
Background Transposable elements are found in the genomes of nearly all eukaryotes. The
recent completion of the Release 3 euchromatic genomic sequence of Drosophila …

Gene expression divergence recapitulates the developmental hourglass model

…, DL Corcoran, J Jarrells, U Ohler, CM Bergman… - Nature, 2010 - nature.com
The observation that animal morphology tends to be conserved during the embryonic phylotypic
period (a period of maximal similarity between the species within each animal phylum) …

[HTML][HTML] Combined evidence annotation of transposable elements in genome sequences

H Quesneville, CM Bergman, O Andrieu… - PLoS computational …, 2005 - journals.plos.org
Transposable elements (TEs) are mobile, repetitive sequences that make up significant
fractions of metazoan genomes. Despite their near ubiquity and importance in genome and …

[HTML][HTML] LINNAEUS: a species name identification system for biomedical literature

M Gerner, G Nenadic, CM Bergman - BMC bioinformatics, 2010 - Springer
Background The task of recognizing and identifying species names in biomedical literature
has recently been regarded as critical for a number of applications in text and data mining, …

ORegAnno: an open-access community-driven resource for regulatory annotation

…, W Wasserman, R Hardison, CM Bergman… - Nucleic acids …, 2007 - academic.oup.com
ORegAnno is an open-source, open-access database and literature curation system for
community-based annotation of experimentally identified DNA regulatory regions, transcription …

Discovering and detecting transposable elements in genome sequences

CM Bergman, H Quesneville - Briefings in bioinformatics, 2007 - academic.oup.com
The contribution of transposable elements (TEs) to genome structure and evolution as well
as their impact on genome sequencing, assembly, annotation and alignment has generated …

[HTML][HTML] Principles of genome evolution in the Drosophila melanogaster species group

…, LDW Hillier, J Roote, M Ashburner, CM Bergman - PLoS …, 2007 - journals.plos.org
That closely related species often differ by chromosomal inversions was discovered by
Sturtevant and Plunkett in 1926. Our knowledge of how these inversions originate is still very …