User profiles for Casey M. Bergman
Casey BergmanAssociate Professor, Department of Genetics & Institute of Bioinformatics, University of … Verified email at uga.edu Cited by 13677 |
[HTML][HTML] Evolution of genes and genomes on the Drosophila phylogeny
Comparative analysis of multiple genomes in a phylogenetic framework dramatically improves
the precision and sensitivity of evolutionary inference, producing more robust results than …
the precision and sensitivity of evolutionary inference, producing more robust results than …
[HTML][HTML] The Drosophila melanogaster Genetic Reference Panel
…, KC Worley, YQ Wu, A Yamamoto, Y Zhu, CM Bergman… - Nature, 2012 - nature.com
A major challenge of biology is understanding the relationship between molecular genetic
variation and variation in quantitative traits, including fitness. This relationship determines our …
variation and variation in quantitative traits, including fitness. This relationship determines our …
Population genomics of domestic and wild yeasts
…, A Burt, V Koufopanou, IJ Tsai, CM Bergman… - Nature, 2009 - nature.com
Since the completion of the genome sequence of Saccharomyces cerevisiae in 1996 (refs 1
), there has been a large increase in complete genome sequences, accompanied by great …
), there has been a large increase in complete genome sequences, accompanied by great …
[HTML][HTML] The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective
JS Kaminker, CM Bergman, B Kronmiller, J Carlson… - Genome biology, 2002 - Springer
Background Transposable elements are found in the genomes of nearly all eukaryotes. The
recent completion of the Release 3 euchromatic genomic sequence of Drosophila …
recent completion of the Release 3 euchromatic genomic sequence of Drosophila …
Gene expression divergence recapitulates the developmental hourglass model
The observation that animal morphology tends to be conserved during the embryonic phylotypic
period (a period of maximal similarity between the species within each animal phylum) …
period (a period of maximal similarity between the species within each animal phylum) …
[HTML][HTML] Combined evidence annotation of transposable elements in genome sequences
H Quesneville, CM Bergman, O Andrieu… - PLoS computational …, 2005 - journals.plos.org
Transposable elements (TEs) are mobile, repetitive sequences that make up significant
fractions of metazoan genomes. Despite their near ubiquity and importance in genome and …
fractions of metazoan genomes. Despite their near ubiquity and importance in genome and …
[HTML][HTML] LINNAEUS: a species name identification system for biomedical literature
Background The task of recognizing and identifying species names in biomedical literature
has recently been regarded as critical for a number of applications in text and data mining, …
has recently been regarded as critical for a number of applications in text and data mining, …
ORegAnno: an open-access community-driven resource for regulatory annotation
ORegAnno is an open-source, open-access database and literature curation system for
community-based annotation of experimentally identified DNA regulatory regions, transcription …
community-based annotation of experimentally identified DNA regulatory regions, transcription …
Discovering and detecting transposable elements in genome sequences
CM Bergman, H Quesneville - Briefings in bioinformatics, 2007 - academic.oup.com
The contribution of transposable elements (TEs) to genome structure and evolution as well
as their impact on genome sequencing, assembly, annotation and alignment has generated …
as their impact on genome sequencing, assembly, annotation and alignment has generated …
[HTML][HTML] Principles of genome evolution in the Drosophila melanogaster species group
…, LDW Hillier, J Roote, M Ashburner, CM Bergman - PLoS …, 2007 - journals.plos.org
That closely related species often differ by chromosomal inversions was discovered by
Sturtevant and Plunkett in 1926. Our knowledge of how these inversions originate is still very …
Sturtevant and Plunkett in 1926. Our knowledge of how these inversions originate is still very …