Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
To the Editor—Rapid advances in DNA-sequencing and bioinformatics technologies in the
past two decades have substantially improved understanding of the microbial world. This …
past two decades have substantially improved understanding of the microbial world. This …
[HTML][HTML] Species from feces: order-wide identification of Chiroptera from guano and other non-invasive genetic samples
Bat guano is a relatively untapped reservoir of information, having great utility as a DNA
source because it is often available at roosts even when bats are not and is an easy type of …
source because it is often available at roosts even when bats are not and is an easy type of …
[HTML][HTML] Comparative genomic analyses reveal broad diversity in botulinum-toxin-producing Clostridia
Background Clostridium botulinum is a diverse group of bacteria characterized by the
production of botulinum neurotoxin. Botulinum neurotoxins are classified into serotypes (BoNT/A–G…
production of botulinum neurotoxin. Botulinum neurotoxins are classified into serotypes (BoNT/A–G…
[HTML][HTML] Domestic canines do not display evidence of gut microbial dysbiosis in the presence of Clostridioides (Clostridium) difficile, despite cellular susceptibility to its …
…, J Vinocur, EW Settles, KC Headley, CHD Williamson… - Anaerobe, 2019 - Elsevier
Clostridioides difficile infection (CDI) is an emerging public health threat and C. difficile is the
most common cause of antimicrobial-associated diarrhea worldwide and the leading cause …
most common cause of antimicrobial-associated diarrhea worldwide and the leading cause …
[HTML][HTML] Diverse lineages of pathogenic Leptospira species are widespread in the environment in Puerto Rico, USA
…, KR Celona, CHD Williamson… - PLOS Neglected …, 2022 - journals.plos.org
Background Leptospirosis, caused by Leptospira bacteria, is a common zoonosis worldwide,
especially in the tropics. Reservoir species and risk factors have been identified but …
especially in the tropics. Reservoir species and risk factors have been identified but …
Genomic sequences of six botulinum neurotoxin-producing strains representing three clostridial species illustrate the mobility and diversity of botulinum neurotoxin …
…, KK Hill, G Xie, BT Foley, CHD Williamson… - Infection, Genetics and …, 2015 - Elsevier
The whole genomes for six botulinum neurotoxin-producing clostridial strains were sequenced
to provide references for under-represented toxin types, bivalent strains or unusual toxin …
to provide references for under-represented toxin types, bivalent strains or unusual toxin …
Botulinum neurotoxin-producing bacteria. Isn't it time that we called a species a species?
Botulinum neurotoxins (BoNTs) are produced by a diverse set of seven clostridial species,
though alternate naming systems have developed over the last 100 years. Starting in the …
though alternate naming systems have developed over the last 100 years. Starting in the …
[HTML][HTML] Phenotypic characterization and whole genome analysis of extended-spectrum beta-lactamase-producing bacteria isolated from dogs in Germany
Asymptomatic colonization with extended-spectrum beta-lactamase (ESBL) producing
Enterobacteriaceae has been described for humans, various mammal species, and birds. Here, …
Enterobacteriaceae has been described for humans, various mammal species, and birds. Here, …
First Case of Brucellosis Caused by an Amphibian-type Brucella
…, E Gay, JT Foster, CHD Williamson… - Clinical Infectious …, 2021 - academic.oup.com
We report the first case of brucellosis caused by an isolate whose genome is identical that
of a frog isolate from Texas, demonstrating the zoonotic potential of amphibian-type Brucella. …
of a frog isolate from Texas, demonstrating the zoonotic potential of amphibian-type Brucella. …
Comparison of Brucella abortus population structure based on genotyping methods with different levels of resolution
CR Pereira, RC Neia, SB Silva, CHD Williamson… - Journal of …, 2023 - Elsevier
Numerous genotyping techniques based on different principles and with different costs and
levels of resolution are currently available for understanding the transmission dynamics of …
levels of resolution are currently available for understanding the transmission dynamics of …