Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data
…, D Arcila, R Betancur-R, C Li… - Proceedings of the …, 2018 - National Acad Sciences
Our understanding of phylogenetic relationships among bony fishes has been transformed
by analysis of a small number of genes, but uncertainty remains around critical nodes. …
by analysis of a small number of genes, but uncertainty remains around critical nodes. …
[HTML][HTML] The tree of life and a new classification of bony fishes
The tree of life of fishes is in a state of flux because we still lack a comprehensive phylogeny
that includes all major groups. The situation is most critical for a large clade of spiny-finned …
that includes all major groups. The situation is most critical for a large clade of spiny-finned …
[HTML][HTML] A practical approach to phylogenomics: the phylogeny of ray-finned fish (Actinopterygii) as a case study
Background Molecular systematics occupies one of the central stages in biology in the
genomic era, ushered in by unprecedented progress in DNA technology. The inference of …
genomic era, ushered in by unprecedented progress in DNA technology. The inference of …
Optimal data partitioning and a test case for ray-finned fishes (Actinopterygii) based on ten nuclear loci
Data partitioning, the combined phylogenetic analysis of homogeneous blocks of data, is a
common strategy used to accommodate heterogeneities in complex multilocus data sets. …
common strategy used to accommodate heterogeneities in complex multilocus data sets. …
Capturing protein-coding genes across highly divergent species
DNA hybridization capture combined with next generation sequencing can be used to
determine the sequences of hundreds of target genes across hundreds of individuals in a single …
determine the sequences of hundreds of target genes across hundreds of individuals in a single …
[HTML][HTML] Multi-locus phylogenetic analysis reveals the pattern and tempo of bony fish evolution
RE Broughton, R Betancur-R, C Li, G Arratia… - PLoS currents, 2013 - ncbi.nlm.nih.gov
Over half of all vertebrates are “fishes”, which exhibit enormous diversity in morphology,
physiology, behavior, reproductive biology, and ecology. Investigation of fundamental areas of …
physiology, behavior, reproductive biology, and ecology. Investigation of fundamental areas of …
Cold tolerance of three strains of Nile tilapia, Oreochromis niloticus, in China
Tolerance of three strains (GIFT, Sudan 78, Egypt 88) of Nile tilapia, Oreochromis niloticus,
to naturally decreasing temperature was evaluated and determined in the Shanghai area. …
to naturally decreasing temperature was evaluated and determined in the Shanghai area. …
[HTML][HTML] An optimized method for high-titer lentivirus preparations without ultracentrifugation
Lentiviral technology has proven to be a powerful tool to express exogenous genes in dividing
and non-dividing cells. Currently, most protocols for generating high-titer lentivirus require …
and non-dividing cells. Currently, most protocols for generating high-titer lentivirus require …
Addressing gene tree discordance and non-stationarity to resolve a multi-locus phylogeny of the flatfishes (Teleostei: Pleuronectiformes)
R Betancur-R, C Li, TA Munroe… - Systematic …, 2013 - academic.oup.com
Non-homogeneous processes and, in particular, base compositional non-stationarity have
long been recognized as a critical source of systematic error. But only a small fraction of …
long been recognized as a critical source of systematic error. But only a small fraction of …
Molecular phylogeny of Clupeiformes (Actinopterygii) inferred from nuclear and mitochondrial DNA sequences
C Li, G Ortí - Molecular phylogenetics and evolution, 2007 - Elsevier
The taxonomy of clupeiforms has been extensively studied, yet phylogenetic relationships
among component taxa remain controversial or unresolved. Here we test current and new …
among component taxa remain controversial or unresolved. Here we test current and new …