User profiles for Chris P. Barnes
Chris P BarnesUniversity College London Verified email at ucl.ac.uk Cited by 23629 |
[HTML][HTML] Automated design of synthetic microbial communities
Microbial species rarely exist in isolation. In naturally occurring microbial systems there is
strong evidence for a positive relationship between species diversity and productivity of …
strong evidence for a positive relationship between species diversity and productivity of …
Bayesian design of synthetic biological systems
CP Barnes, D Silk, X Sheng… - Proceedings of the …, 2011 - National Acad Sciences
Here we introduce a new design framework for synthetic biology that exploits the advantages
of Bayesian model selection. We will argue that the difference between inference and …
of Bayesian model selection. We will argue that the difference between inference and …
Evolutionary dynamics of neoantigens in growing tumors
Cancers accumulate mutations that lead to neoantigens, novel peptides that elicit an
immune response, and consequently undergo evolutionary selection. Here we establish how …
immune response, and consequently undergo evolutionary selection. Here we establish how …
Measuring the distribution of fitness effects in somatic evolution by combining clonal dynamics with dN/dS ratios
The distribution of fitness effects (DFE) defines how new mutations spread through an evolving
population. The ratio of non-synonymous to synonymous mutations (dN/dS) has become …
population. The ratio of non-synonymous to synonymous mutations (dN/dS) has become …
Identification of neutral tumor evolution across cancer types
Despite extraordinary efforts to profile cancer genomes, interpreting the vast amount of
genomic data in the light of cancer evolution remains challenging. Here we demonstrate that …
genomic data in the light of cancer evolution remains challenging. Here we demonstrate that …
A framework for parameter estimation and model selection from experimental data in systems biology using approximate Bayesian computation
As modeling becomes a more widespread practice in the life sciences and biomedical
sciences, researchers need reliable tools to calibrate models against ever more complex and …
sciences, researchers need reliable tools to calibrate models against ever more complex and …
Quantification of subclonal selection in cancer from bulk sequencing data
Subclonal architectures are prevalent across cancer types. However, the temporal evolutionary
dynamics that produce tumor subclones remain unknown. Here we measure clone …
dynamics that produce tumor subclones remain unknown. Here we measure clone …
[HTML][HTML] Phenotypic plasticity and genetic control in colorectal cancer evolution
Genetic and epigenetic variation, together with transcriptional plasticity, contribute to
intratumour heterogeneity 1 . The interplay of these biological processes and their respective …
intratumour heterogeneity 1 . The interplay of these biological processes and their respective …
Clinical drug resistance linked to interconvertible phenotypic and functional states of tumor-propagating cells in multiple myeloma
The phenotype and function of cells enriched in tumor-propagating activity and their relationship
to the phenotypic architecture in multiple myeloma (MM) are controversial. Here, in a …
to the phenotypic architecture in multiple myeloma (MM) are controversial. Here, in a …
On optimality of kernels for approximate Bayesian computation using sequential Monte Carlo
Approximate Bayesian computation (ABC) has gained popularity over the past few years for
the analysis of complex models arising in population genetics, epidemiology and system …
the analysis of complex models arising in population genetics, epidemiology and system …