SCExecute: custom cell barcode-stratified analyses of scRNA-seq data

N Edwards, C Dillard, NM Prashant, L Hongyu… - …, 2023 - academic.oup.com
Motivation In single-cell RNA-sequencing (scRNA-seq) data, stratification of sequencing reads
by cellular barcode is necessary to study cell-specific features. However, apart from gene …

[HTML][HTML] Improved SNV discovery in barcode-stratified scRNA-seq alignments

P NM, H Liu, C Dillard, H Ibeawuchi, T Alsaeedy… - Genes, 2021 - mdpi.com
Currently, the detection of single nucleotide variants (SNVs) from 10 x Genomics single-cell
RNA sequencing data (scRNA-seq) is typically performed on the pooled sequencing reads …

SCExecute: cell barcode-stratified analyses of scRNA-seq data

N Edwards, C Dillard, NM Prashant, H Liu, M Yang… - bioRxiv, 2022 - biorxiv.org
Motivation In single-cell RNA-sequencing (scRNA-seq) data, stratification of sequencing reads
by cellular barcode is necessary to study cell-specific features. However, apart from gene …

A wealth of novel cell-specific expressed SNVs from tumor and normal scRNA-seq datasets

C Dillard, E Ulianova, NM Prashant, H Liu, N Edwards… - bioRxiv, 2022 - biorxiv.org
We demonstrate a novel variant calling strategy using barcode-stratified alignments on 25
tumor and normal 10XGenomics scRNA-seq datasets (>200,000 cells). Our approach …

Cell-Level Mutational Signatures in Cancer

C Dillard - 2022 - search.proquest.com
Mutational signatures are the collection of operative mutational processes occurring in a cell.
All cancer genomes carry somatic mutations, and these mutations can be caused by …

Nonlinear Electron Acoustic Waves in the Inner Magnetosphere

CS Dillard, I Vasko, F Mozer… - AGU Fall Meeting …, 2017 - ui.adsabs.harvard.edu
The Van Allen Probes observe intense broad-band electrostatic wave activity in the inner
magnetosphere. The high-resolution electric field measurements show that these broad-band …

" Pray Without Ceasing": Annie Dillard Among the Nature Writers

JI McClintock - Cithara, 1990 - search.proquest.com
… Worrying about and questioning the Christian response to the sufferings of the innocent,
Dillard, near despair, asks, “Do we really need more victims to remind us that we're all victims?" …

Annie Dillard: Ritualist

EW Teale - … , Edward Abbey, Annie Dillard, and Gary Snyder, 1994 - books.google.com
… Agonizing over the Christian response to the sufferings of the innocent, Dillard, near despair,
asks," Do we really need more victims to remind us that we're all victims?"(62). Sounding …

[PDF][PDF] Improved SNV Discovery in Barcode-Stratified scRNA-seq Alignments. Genes 2021, 12, 1558

P NM, H Liu, C Dillard, H Ibeawuchi, T Alsaeedy… - 2021 - academia.edu
Currently, the detection of single nucleotide variants (SNVs) from 10 x Genomics single-cell
RNA sequencing data (scRNA-seq) is typically performed on the pooled sequencing reads …