Protter: interactive protein feature visualization and integration with experimental proteomic data

U Omasits, CH Ahrens, S Müller, B Wollscheid - Bioinformatics, 2014 - academic.oup.com
The ability to integrate and visualize experimental proteomic evidence in the context of rich
protein feature annotations represents an unmet need of the proteomics community. Here we …

[HTML][HTML] Explosive cell lysis as a mechanism for the biogenesis of bacterial membrane vesicles and biofilms

…, X Yap, LG Monahan, R Cavaliere, CH Ahrens… - Nature …, 2016 - nature.com
Many bacteria produce extracellular and surface-associated components such as membrane
vesicles (MVs), extracellular DNA and moonlighting cytosolic proteins for which the …

Generating and navigating proteome maps using mass spectrometry

CH Ahrens, E Brunner, E Qeli, K Basler… - … reviews Molecular cell …, 2010 - nature.com
Proteomes, the ensembles of all proteins expressed by cells or tissues, are typically
analysed by mass spectrometry. Recent technical and computational advances have greatly …

Identification of genes involved in DNA replication of the Autographa californica baculovirus.

M Kool, CH Ahrens, RW Goldbach… - Proceedings of the …, 1994 - National Acad Sciences
By use of a transient replication assay, nine genes involved in DNA replication were identified
in the genome of the Autographa californica baculovirus. Six genes encoding helicase, …

A high-quality catalog of the Drosophila melanogaster proteome

…, CH Ahrens, S Mohanty, H Baetschmann… - Nature …, 2007 - nature.com
Understanding how proteins and their complex interaction networks convert the genomic
information into a dynamic living organism is a fundamental challenge in biological sciences. …

[HTML][HTML] Comparative functional analysis of the Caenorhabditis elegans and Drosophila melanogaster proteomes

SP Schrimpf, M Weiss, L Reiter, CH Ahrens… - PLoS …, 2009 - journals.plos.org
The nematode Caenorhabditis elegans is a popular model system in genetics, not least
because a majority of human disease genes are conserved in C. elegans . To generate a …

Genome-Wide Transcript Analysis of Bradyrhizobium japonicum Bacteroids in Soybean Root Nodules

G Pessi, CH Ahrens, H Rehrauer… - Molecular plant …, 2007 - Am Phytopath Society
The transcriptome of endosymbiotic Bradyrhizobium japonicum bacteroids was assessed,
using RNA extracted from determinate soybean root nodules. Results were compared with the …

Cis-2-dodecenoic acid receptor RpfR links quorum-sensing signal perception with regulation of virulence through cyclic dimeric guanosine monophosphate turnover

…, CH Ahrens, C Chang, H Song… - Proceedings of the …, 2012 - National Acad Sciences
Many bacterial pathogens produce diffusible signal factor (DSF)-type quorum sensing (QS)
signals in modulation of virulence and biofilm formation. Previous work on Xanthomonas …

[HTML][HTML] Identification and Functional Characterization of N-Terminally Acetylated Proteins in Drosophila melanogaster

…, J Vandekerckhove, K Basler, CH Ahrens… - PLoS …, 2009 - journals.plos.org
Protein modifications play a major role for most biological processes in living organisms.
Amino-terminal acetylation of proteins is a common modification found throughout the tree of life…

Deterministic protein inference for shotgun proteomics data provides new insights into Arabidopsis pollen development and function

…, R Zhang, B Roschitzki, K Basler, CH Ahrens… - Genome …, 2009 - genome.cshlp.org
Pollen, the male gametophyte of flowering plants, represents an ideal biological system to
study developmental processes, such as cell polarity, tip growth, and morphogenesis. Upon …