[HTML][HTML] CUT&Tag for efficient epigenomic profiling of small samples and single cells

HS Kaya-Okur, SJ Wu, CA Codomo, ES Pledger… - Nature …, 2019 - nature.com
Many chromatin features play critical roles in regulating gene expression. A complete
understanding of gene regulation will require the mapping of specific chromatin features in small …

Spectrum of chemically induced mutations from a large-scale reverse-genetic screen in Arabidopsis

EA Greene, CA Codomo, NE Taylor, JG Henikoff… - Genetics, 2003 - academic.oup.com
Chemical mutagenesis has been the workhorse of traditional genetics, but it has not been
possible to determine underlying rates or distributions of mutations from phenotypic screens. …

Large-scale discovery of induced point mutations with high-throughput TILLING

BJ Till, SH Reynolds, EA Greene, CA Codomo… - Genome …, 2003 - genome.cshlp.org
TILLING (Targeting Induced LocalLesions in Genomes) is a general reverse-genetic
strategy that provides an allelic series of induced point mutations in genes of interest. High-…

Efficient discovery of DNA polymorphisms in natural populations by Ecotilling

…, SH Reynolds, EA Greene, CA Codomo… - The Plant …, 2004 - Wiley Online Library
We have adapted the mutation detection technology used in Targeting Induced Local
Lesions in Genomes (TILLING) to the discovery of polymorphisms in natural populations. The …

[HTML][HTML] Discovery of induced point mutations in maize genes by TILLING

…, C Burtner, K Young, E Bowers, CA Codomo… - BMC plant biology, 2004 - Springer
Background Going from a gene sequence to its function in the context of a whole organism
requires a strategy for targeting mutations, referred to as reverse genetics. Reverse genetics …

[HTML][HTML] Multifactorial profiling of epigenetic landscapes at single-cell resolution using MulTI-Tag

MP Meers, G Llagas, DH Janssens, CA Codomo… - Nature …, 2023 - nature.com
Chromatin profiling at locus resolution uncovers gene regulatory features that define cell
types and developmental trajectories, but it remains challenging to map and compare different …

High-throughput TILLING for functional genomics

…, T Colbert, R Tompa, LC Enns, CA Codomo… - Plant functional …, 2003 - Springer
Targeting-induced local lesions in genomes (TILLING) is a general strategy for identifying
induced point mutations that can be applied to almost any organism. Here, we describe the …

The budding yeast Centromere DNA Element II wraps a stable Cse4 hemisome in either orientation in vivo

…, K Krassovsky, TD Bryson, CA Codomo… - Elife, 2014 - elifesciences.org
10.7554/eLife.01861.001 In budding yeast, a single cenH3 (Cse4) nucleosome occupies the
∼120-bp functional centromere, however conflicting structural models for the particle have …

Scalable single-cell profiling of chromatin modifications with sciCUT&Tag

DH Janssens, JE Greene, SJ Wu, CA Codomo… - Nature …, 2024 - nature.com
Cleavage under targets and tagmentation (CUT&Tag) is an antibody-directed in situ chromatin
profiling strategy that is rapidly replacing immune precipitation-based methods, such as …

Reconstitution of hemisomes on budding yeast centromeric DNA

T Furuyama, CA Codomo, S Henikoff - Nucleic acids research, 2013 - academic.oup.com
The structure of nucleosomes that contain the cenH3 histone variant has been controversial.
In budding yeast, a single right-handed cenH3/H4/H2A/H2B tetramer wraps the ∼80-bp …