Massively parallel de novo protein design for targeted therapeutics

…, SM Bernard, L Zhang, KH Lam, G Yao, CD Bahl… - Nature, 2017 - nature.com
De novo protein design holds promise for creating small stable proteins with shapes customized
to bind therapeutic targets. We describe a massively parallel approach for designing, …

Accurate de novo design of hyperstable constrained peptides

G Bhardwaj, VK Mulligan, CD Bahl, JM Gilmore… - Nature, 2016 - nature.com
Naturally occurring, pharmacologically active peptides constrained with covalent crosslinks
generally have shapes that have evolved to fit precisely into binding pockets on their targets. …

Pseudomonas aeruginosa sabotages the generation of host proresolving lipid mediators

…, J Yang, DH Kwak, CD Bahl… - Proceedings of the …, 2017 - National Acad Sciences
Recurrent Pseudomonas aeruginosa infections coupled with robust, damaging neutrophilic
inflammation characterize the chronic lung disease cystic fibrosis (CF). The proresolving …

[HTML][HTML] Discovery and engineering of enhanced SUMO protease enzymes

…, LP Carter, D Baker, CD Lima, CD Bahl - Journal of Biological …, 2018 - ASBMB
Small ubiquitin-like modifier (SUMO) is commonly used as a protein fusion domain to facilitate
expression and purification of recombinant proteins, and a SUMO-specific protease is …

Screening, large-scale production and structure-based classification of cystine-dense peptides

…, D May, A Watson, MK Chan, CD Bahl… - Nature structural & …, 2018 - nature.com
Peptides folded through interwoven disulfides display extreme biochemical properties and
unique medicinal potential. However, their exploitation has been hampered by the limited …

[PDF][PDF] IgG targeting distinct seasonal coronavirus-conserved SARS-CoV-2 spike subdomains correlates with differential COVID-19 disease outcomes

…, M Calvo, Y Pinos, JW Bowman, CD Bahl… - Cell Reports, 2022 - cell.com
Despite SARS-CoV-2 being a "novel" virus, early detection of anti-spike IgG in severe
COVID-19 patients may be caused by the amplification of humoral memory responses against …

[HTML][HTML] Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks

…, CD Bahl, C Bailey-Kellogg, D Baker… - Nature …, 2021 - nature.com
Each year vast international resources are wasted on irreproducible research. The scientific
community has been slow to adopt standard software engineering practices, despite the …

Transoceanic Arabic historiography: sharing the past of the sixteenth-century western Indian Ocean

CD Bahl - Journal of Global History, 2020 - cambridge.org
The early modern western Indian Ocean constituted a dynamic space of human interaction.
While scholarship has mostly concentrated on trade and commerce, recent studies have …

[HTML][HTML] Simultaneous enhancement of multiple functional properties using evolution-informed protein design

…, K Roberts, G Kaur, M Stiffler, DS Marks, CD Bahl… - bioRxiv, 2023 - ncbi.nlm.nih.gov
Designing optimized proteins is important for a range of practical applications. Protein design
is a rapidly developing field that would benefit from approaches that enable many changes …

Crystal structure of the cystic fibrosis transmembrane conductance regulator inhibitory factor Cif reveals novel active-site features of an epoxide hydrolase virulence …

CD Bahl, C Morisseau, JM Bomberger… - Journal of …, 2010 - Am Soc Microbiol
Cystic fibrosis transmembrane conductance regulator (CFTR) inhibitory factor (Cif) is a
virulence factor secreted by Pseudomonas aeruginosa that reduces the quantity of CFTR in the …