User profiles for Claire Bertelli
Claire BertelliUniversity Hospital Center of Lausanne Verified email at chuv.ch Cited by 4448 |
IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets
C Bertelli, MR Laird, KP Williams… - Nucleic acids …, 2017 - academic.oup.com
IslandViewer ( http://www.pathogenomics.sfu.ca/islandviewer/ ) is a widely-used webserver
for the prediction and interactive visualization of genomic islands (GIs, regions of probable …
for the prediction and interactive visualization of genomic islands (GIs, regions of probable …
EDGAR 2.0: an enhanced software platform for comparative gene content analyses
…, J Kreis, S Spänig, T Juhre, C Bertelli… - Nucleic acids …, 2016 - academic.oup.com
The rapidly increasing availability of microbial genome sequences has led to a growing
demand for bioinformatics software tools that support the functional analysis based on the …
demand for bioinformatics software tools that support the functional analysis based on the …
[HTML][HTML] Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling
Background The Amoebozoa constitute one of the primary divisions of eukaryotes, encompassing
taxa of both biomedical and evolutionary importance, yet its genomic diversity remains …
taxa of both biomedical and evolutionary importance, yet its genomic diversity remains …
Lausannevirus, a giant amoebal virus encoding histone doublets
V Thomas, C Bertelli, F Collyn… - Environmental …, 2011 - Wiley Online Library
Large viruses infecting algae or amoebae belong to the NucleoCytoplasmic Large DNA
Viruses (NCLDV) and present genotypic and phenotypic characteristics that have raised major …
Viruses (NCLDV) and present genotypic and phenotypic characteristics that have raised major …
Bifidobacterium longum Bacteremia in Preterm Infants Receiving Probiotics
C Bertelli, T Pillonel, A Torregrossa… - Clinical Infectious …, 2015 - academic.oup.com
Administration of probiotics to premature newborns has been shown to prevent necrotizing
enterocolitis and reduce all-cause mortality. In our hospital, we documented 2 cases of …
enterocolitis and reduce all-cause mortality. In our hospital, we documented 2 cases of …
[HTML][HTML] Genotypes associated with Listeria monocytogenes isolates displaying impaired or enhanced tolerances to cold, salt, acid, or desiccation stress
The human pathogen Listeria monocytogenes is a large concern in the food industry where
its continuous detection in food products has caused a string of recalls in North America and …
its continuous detection in food products has caused a string of recalls in North America and …
Improved genomic island predictions with IslandPath-DIMOB
C Bertelli, FSL Brinkman - Bioinformatics, 2018 - academic.oup.com
Motivation Genomic islands (GIs) are clusters of genes of probable horizontal origin that play
a major role in bacterial and archaeal genome evolution and microbial adaptability. They …
a major role in bacterial and archaeal genome evolution and microbial adaptability. They …
[HTML][HTML] Reduced chlorine in drinking water distribution systems impacts bacterial biodiversity in biofilms
C Bertelli, S Courtois, M Rosikiewicz, P Piriou… - Frontiers in …, 2018 - frontiersin.org
In drinking water distribution systems (DWDS), a disinfectant residual is usually applied to
limit bacterial regrowth. However, delivering water with no or reduced chlorine residual could …
limit bacterial regrowth. However, delivering water with no or reduced chlorine residual could …
[HTML][HTML] The Waddlia Genome: A Window into Chlamydial Biology
Growing evidence suggests that a novel member of the Chlamydiales order, Waddlia
chondrophila, is a potential agent of miscarriage in humans and abortion in ruminants. Due to the …
chondrophila, is a potential agent of miscarriage in humans and abortion in ruminants. Due to the …
Microbial genomic island discovery, visualization and analysis
C Bertelli, KE Tilley, FSL Brinkman - Briefings in bioinformatics, 2019 - academic.oup.com
Horizontal gene transfer (also called lateral gene transfer) is a major mechanism for microbial
genome evolution, enabling rapid adaptation and survival in specific niches. Genomic …
genome evolution, enabling rapid adaptation and survival in specific niches. Genomic …