User profiles for Claire Bertelli

Claire Bertelli

University Hospital Center of Lausanne
Verified email at chuv.ch
Cited by 4448

IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets

C Bertelli, MR Laird, KP Williams… - Nucleic acids …, 2017 - academic.oup.com
IslandViewer ( http://www.pathogenomics.sfu.ca/islandviewer/ ) is a widely-used webserver
for the prediction and interactive visualization of genomic islands (GIs, regions of probable …

EDGAR 2.0: an enhanced software platform for comparative gene content analyses

…, J Kreis, S Spänig, T Juhre, C Bertelli… - Nucleic acids …, 2016 - academic.oup.com
The rapidly increasing availability of microbial genome sequences has led to a growing
demand for bioinformatics software tools that support the functional analysis based on the …

[HTML][HTML] Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling

…, B Liu, I Lagkouvardos, S Roy, N Zafar, C Bertelli… - Genome biology, 2013 - Springer
Background The Amoebozoa constitute one of the primary divisions of eukaryotes, encompassing
taxa of both biomedical and evolutionary importance, yet its genomic diversity remains …

Lausannevirus, a giant amoebal virus encoding histone doublets

V Thomas, C Bertelli, F Collyn… - Environmental …, 2011 - Wiley Online Library
Large viruses infecting algae or amoebae belong to the NucleoCytoplasmic Large DNA
Viruses (NCLDV) and present genotypic and phenotypic characteristics that have raised major …

Bifidobacterium longum Bacteremia in Preterm Infants Receiving Probiotics

C Bertelli, T Pillonel, A Torregrossa… - Clinical Infectious …, 2015 - academic.oup.com
Administration of probiotics to premature newborns has been shown to prevent necrotizing
enterocolitis and reduce all-cause mortality. In our hospital, we documented 2 cases of …

[HTML][HTML] Genotypes associated with Listeria monocytogenes isolates displaying impaired or enhanced tolerances to cold, salt, acid, or desiccation stress

…, J Chen, BK Dhillon, C Laing, C Bertelli… - Frontiers in …, 2017 - frontiersin.org
The human pathogen Listeria monocytogenes is a large concern in the food industry where
its continuous detection in food products has caused a string of recalls in North America and …

Improved genomic island predictions with IslandPath-DIMOB

C Bertelli, FSL Brinkman - Bioinformatics, 2018 - academic.oup.com
Motivation Genomic islands (GIs) are clusters of genes of probable horizontal origin that play
a major role in bacterial and archaeal genome evolution and microbial adaptability. They …

[HTML][HTML] Reduced chlorine in drinking water distribution systems impacts bacterial biodiversity in biofilms

C Bertelli, S Courtois, M Rosikiewicz, P Piriou… - Frontiers in …, 2018 - frontiersin.org
In drinking water distribution systems (DWDS), a disinfectant residual is usually applied to
limit bacterial regrowth. However, delivering water with no or reduced chlorine residual could …

[HTML][HTML] The Waddlia Genome: A Window into Chlamydial Biology

C Bertelli, F Collyn, A Croxatto, C Rückert… - PloS one, 2010 - journals.plos.org
Growing evidence suggests that a novel member of the Chlamydiales order, Waddlia
chondrophila, is a potential agent of miscarriage in humans and abortion in ruminants. Due to the …

Microbial genomic island discovery, visualization and analysis

C Bertelli, KE Tilley, FSL Brinkman - Briefings in bioinformatics, 2019 - academic.oup.com
Horizontal gene transfer (also called lateral gene transfer) is a major mechanism for microbial
genome evolution, enabling rapid adaptation and survival in specific niches. Genomic …