User profiles for Colin M. Palmer
Colin M PalmerCCP-EM Verified email at stfc.ac.uk Cited by 714 |
[HTML][HTML] Recent developments in the CCP-EM software suite
As part of its remit to provide computational support to the cryo-EM community, the Collaborative
Computational Project for Electron cryo-Microscopy (CCP-EM) has produced a software …
Computational Project for Electron cryo-Microscopy (CCP-EM) has produced a software …
[HTML][HTML] Cryo-EM single-particle structure refinement and map calculation using Servalcat
In 2020, cryo-EM single-particle analysis achieved true atomic resolution thanks to
technological developments in hardware and software. The number of high-resolution …
technological developments in hardware and software. The number of high-resolution …
[HTML][HTML] Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge
This paper describes outcomes of the 2019 Cryo-EM Model Challenge. The goals were to (1)
assess the quality of models that can be produced from cryogenic electron microscopy (…
assess the quality of models that can be produced from cryogenic electron microscopy (…
[HTML][HTML] Mitigating local over-fitting during single particle reconstruction with SIDESPLITTER
Single particle analysis has become a key structural biology technique. Experimental images
are extremely noisy, and during iterative refinement it is possible to stably incorporate …
are extremely noisy, and during iterative refinement it is possible to stably incorporate …
[HTML][HTML] A local agreement filtering algorithm for transmission EM reconstructions
K Ramlaul, CM Palmer, CHS Aylett - Journal of structural biology, 2019 - Elsevier
We present LAFTER, an algorithm for de-noising single particle reconstructions from cryo-EM.
Single particle analysis entails the reconstruction of high-resolution volumes from tens of …
Single particle analysis entails the reconstruction of high-resolution volumes from tens of …
[HTML][HTML] A cylindrical specimen holder for electron cryo-tomography
The use of slab-like flat specimens for electron cryo-tomography restricts the range of
viewing angles that can be used. This leads to the “missing wedge” problem, which causes …
viewing angles that can be used. This leads to the “missing wedge” problem, which causes …
[HTML][HTML] Real space in cryo-EM: the future is local
CM Palmer, CHS Aylett - Acta Crystallographica Section D: Structural …, 2022 - scripts.iucr.org
Cryo-EM images have extremely low signal-to-noise levels because biological macromolecules
are highly radiation-sensitive, requiring low-dose imaging, and because the molecules …
are highly radiation-sensitive, requiring low-dose imaging, and because the molecules …
[HTML][HTML] Predicting protein function from structure—the roles of short-chain dehydrogenase/reductase enzymes in Bordetella O-antigen biosynthesis
The pathogenic bacteria Bordetella parapertussis and Bordetella bronchiseptica express a
lipopolysaccharide O antigen containing a polymer of 2,3-diacetamido-2,3-dideoxy-l-…
lipopolysaccharide O antigen containing a polymer of 2,3-diacetamido-2,3-dideoxy-l-…
[HTML][HTML] Pi sampling: a methodical and flexible approach to initial macromolecular crystallization screening
The Pi sampling method is derived from the incomplete factorial approach to macromolecular
crystallization screen design. The resulting `Pi screens' have a modular distribution of a …
crystallization screen design. The resulting `Pi screens' have a modular distribution of a …
Outcomes of the 2019 EMDataResource model challenge: Validation of cryo-EM models at near-atomic resolution
This paper describes outcomes of the 2019 Cryo-EM Map-based Model Metrics Challenge
sponsored by EMDataResource ( www.emdataresource.org ). The goals of this challenge …
sponsored by EMDataResource ( www.emdataresource.org ). The goals of this challenge …