ContextL is an extension to the Common Lisp Object System that allows for Context-oriented
Programming. It provides means to associate partial class and method definitions with …

Context-dependent behavior is becoming increasingly important for a wide range of application
domains, from pervasive computing to common business applications. Unfortunately, …

Motivation: Post-sequencing DNA analysis typically consists of read mapping followed by
variant calling. Especially for whole genome sequencing, this computational step is very time-…

Motivation Pairwise sequence alignment is undoubtedly a central tool in many bioinformatics
analyses. In this paper, we present a generically accelerated module for pairwise …

Context-aware systems are software systems which adapt their behaviour according to the
context of use. The requirements engineering phase is recognized as a primordial step to …

Context-oriented Programming, or COP, provides programmers with dedicated abstractions
and mechanisms to concisely represent behavioral variations that depend on execution …

Current proposals for load-time transformation of Java classes are either dependent on the
use of a specific class loader or dependent on a specific JVM implementation. This is not due …

We propose a first-class change model for Change-Oriented Software Engineering (COSE).
Based on an evolution scenario, we identify a lack of support in current Interactive …

Background elPrep is an established multi-threaded framework for preparing SAM and BAM
files in sequencing pipelines. To achieve good performance, its software architecture makes …

In Context-oriented Programming (COP), programs can be partitioned into behavioral
variations expressed as sets of partial program definitions. Such layers can be activated and …