Genomic Species Are Ecological Species as Revealed by Comparative Genomics in Agrobacterium tumefaciens

…, J Baude, D Costechareyre, D Chapulliot… - Genome Biology and …, 2011 - academic.oup.com
The definition of bacterial species is based on genomic similarities, giving rise to the operational
concept of genomic species, but the reasons of the occurrence of differentiated genomic …

Rapid and Efficient Identification of Agrobacterium Species by recA Allele Analysis: Agrobacterium recA Diversity

…, A Rhouma, C Lavire, P Portier, D Chapulliot… - Microbial Ecology, 2010 - Springer
The analysis of housekeeping recA gene sequences from 138 strains from 13 species or
genomic species of Agrobacterium, nine being biovar 1 genomospecies, and the others …

Identification of Genomic Species in Agrobacterium Biovar 1 by AFLP Genomic Markers

…, C Mougel, C Lerondelle, D Chapulliot… - Applied and …, 2006 - Am Soc Microbiol
Biovar 1 of the genus Agrobacterium consists of at least nine genomic species that have not
yet received accepted species names. However, rapid identification of these organisms in …

[HTML][HTML] Genomic characterization of Ensifer aridi, a proposed new species of nitrogen-fixing rhizobium recovered from Asian, African and American deserts

…, N Tak, HS Gehlot, C Lavire, T Meyer, D Chapulliot… - BMC genomics, 2017 - Springer
Background Nitrogen fixing bacteria isolated from hot arid areas in Asia, Africa and America
but from diverse leguminous plants have been recently identified as belonging to a possible …

Anthropization level of Lascaux Cave microbiome shown by regional‐scale comparisons of pristine and anthropized caves

…, B Kaufmann, A Dubost, D Chapulliot… - Molecular …, 2019 - Wiley Online Library
Limestone areas across the world develop karstic caves, which are populated by a wide range
of macro‐ and microorganisms. Many of these caves display Paleolithic art or outstanding …

Single acquisition of protelomerase gave rise to speciation of a large and diverse clade within the Agrobacterium/Rhizobium supercluster characterized by the …

…, D Chapulliot, V Daubin, X Nesme, D Muller - Molecular phylogenetics …, 2014 - Elsevier
Linear chromosomes are atypical in bacteria and likely a secondary trait derived from ancestral
circular molecules. Within the Rhizobiaceae family, whose genome contains at least two …

Rapid and accurate species and genomic species identification and exhaustive population diversity assessment of Agrobacterium spp. using recA-based PCR

M Shams, L Vial, D Chapulliot, X Nesme… - Systematic and applied …, 2013 - Elsevier
Agrobacteria are common soil bacteria that interact with plants as commensals, plant
growth promoting rhizobacteria or alternatively as pathogens. Indigenous agrobacterial …

Prokaryotic, microeukaryotic, and fungal composition in a long-term polychlorinated biphenyl-contaminated brownfield

…, L Peluhet, S Czarnes, D Melayah, D Chapulliot… - Microbial ecology, 2023 - Springer
Polychlorinated biphenyls (PCBs) are recognized as persistent organic pollutants and
accumulate in organisms, soils, waters, and sediments, causing major health and ecological …

Development and validation of a UHPLC-ESI-QTOF mass spectrometry method to analyze opines, plant biomarkers of crown gall or hairy root diseases

…, V Gaillard, TN Le, F Bellvert, D Chapulliot… - … of Chromatography B, 2021 - Elsevier
Opines are low-molecular-weight metabolites specifically biosynthesized by agrobacteria-transformed
plant cells when plants are struck by crown gall and hairy root diseases, which …

Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium

…, R Planel, S Penel, D Chapulliot… - Genome biology and …, 2017 - academic.oup.com
… For a similar reason of a high risk of false positives, we did not investigate O and D block
events on the deep, long branches of the species tree (supplementary fig. S1, Supplementary …