User profiles for D. Nachmanson
Daniela NachmansonBioinformatics Scientist, TwinStrand Biosciences Verified email at eng.ucsd.edu Cited by 286 |
[HTML][HTML] Inhibition of mTOR signaling and clinical activity of metformin in oral premalignant lesions
BACKGROUND The aberrant activation of the PI3K/mTOR signaling circuitry is one of the
most frequently dysregulated signaling events in head and neck squamous cell carcinoma (…
most frequently dysregulated signaling events in head and neck squamous cell carcinoma (…
[PDF][PDF] Ultra-sensitive TP53 sequencing for cancer detection reveals progressive clonal selection in normal tissue over a century of human lifespan
…, R Horvat, A Vanderstichele, D Nachmanson… - Cell Reports, 2019 - cell.com
… (C and D) Each spot on the 2D surface represents one of the 1,179 coding positions in
TP53. The y axis indicates mutant allele frequency (MAF). By standard NGS, all positions show …
TP53. The y axis indicates mutant allele frequency (MAF). By standard NGS, all positions show …
Targeted genome fragmentation with CRISPR/Cas9 enables fast and efficient enrichment of small genomic regions and ultra-accurate sequencing with low DNA input …
D Nachmanson, S Lian, EK Schmidt, MJ Hipp… - Genome …, 2018 - genome.cshlp.org
Next-generation sequencing methods suffer from low recovery, uneven coverage, and false
mutations. DNA fragmentation by sonication is a major contributor to these problems …
mutations. DNA fragmentation by sonication is a major contributor to these problems …
[HTML][HTML] The breast pre-cancer atlas illustrates the molecular and micro-environmental diversity of ductal carcinoma in situ
D Nachmanson, A Officer, H Mori, J Gordon… - NPJ Breast …, 2022 - nature.com
Microenvironmental and molecular factors mediating the progression of Breast Ductal
Carcinoma In Situ (DCIS) are not well understood, impeding the development of prevention …
Carcinoma In Situ (DCIS) are not well understood, impeding the development of prevention …
Mitochondrial DNA mutations are associated with ulcerative colitis preneoplasia but tend to be negatively selected in cancer
KT Baker, D Nachmanson, S Kumar, MJ Emond… - Molecular Cancer …, 2019 - AACR
… To further investigate the mutational pattern by biopsy type within the D-loop and non–D-loop
region, we separated transitions and transversions into the corresponding nucleotide …
region, we separated transitions and transversions into the corresponding nucleotide …
Targeted deletion of AKAP7 in dentate granule cells impairs spatial discrimination
…, CA Sanford, MC Slack, J Chin, D Nachmanson… - Elife, 2016 - elifesciences.org
… Western immunoblotting demonstrated that the a isoform is much more abundant than g/d
in the hippocampus (Figure 1B) as well as other brain regions (Figure 1—figure supplement 1)…
in the hippocampus (Figure 1B) as well as other brain regions (Figure 1—figure supplement 1)…
[HTML][HTML] Whole-genome CRISPR screening identifies PI3K/AKT as a downstream component of the oncogenic GNAQ–focal adhesion kinase signaling circuitry
G proteins and G protein–coupled receptors activate a diverse array of signal transduction
pathways that promote cell growth and survival. Indeed, hot spot–activating mutations in …
pathways that promote cell growth and survival. Indeed, hot spot–activating mutations in …
[HTML][HTML] Adopting duplex sequencing technology for genetic toxicity testing: A proof-of-concept mutagenesis experiment with N-ethyl-N-nitrosourea (ENU)-exposed …
…, EK Schmidt, LN Williams, D Nachmanson… - … /Genetic Toxicology and …, 2023 - Elsevier
… , and liver tissues at 3 h, 24 h, 7 d, and 28 d post-exposure. Significant increases in MF were
… 7 d for liver and blood. The canonical, mutational signature of ENU was established by 7 d …
… 7 d for liver and blood. The canonical, mutational signature of ENU was established by 7 d …
[HTML][HTML] Accurate genome-wide genotyping from archival tissue to explore the contribution of common genetic variants to pre-cancer outcomes
… d Evaluation of discrimination of Cox proportional hazard model for BCSE vs no BCSE
outcome using Harrel’s C-index (y-axis) for models only using available risk factors versus …
outcome using Harrel’s C-index (y-axis) for models only using available risk factors versus …
Characterization of TP53 mutations in Pap test DNA of women with and without serous ovarian carcinoma
…, S Lian, Y Zhang, J Fredrickson, D Nachmanson… - Gynecologic …, 2020 - Elsevier
Objective Pap tests hold promise as a molecular diagnostic for serous ovarian cancer, but
previous studies reported limited sensitivity. Furthermore, the presence of somatic mutations in …
previous studies reported limited sensitivity. Furthermore, the presence of somatic mutations in …