Epigenetic polymorphism and the stochastic formation of differentially methylated regions in normal and cancerous tissues
…, R Brosh, S Horn-Saban, DA Zalcenstein… - Nature …, 2012 - nature.com
DNA methylation has been comprehensively profiled in normal and cancer cells, but the
dynamics that form, maintain and reprogram differentially methylated regions remain enigmatic. …
dynamics that form, maintain and reprogram differentially methylated regions remain enigmatic. …
[PDF][PDF] Interconversion between tumorigenic and differentiated states in acute myeloid leukemia
…, DA Zalcenstein, L DiRago, S Wang, D Metcalf… - Cell stem cell, 2019 - cell.com
Tumors are composed of phenotypically heterogeneous cancer cells that often resemble
various differentiation states of their lineage of origin. Within this hierarchy, it is thought that an …
various differentiation states of their lineage of origin. Within this hierarchy, it is thought that an …
[HTML][HTML] Unique properties of a subset of human pluripotent stem cells with high capacity for self-renewal
… Results in b and d display representative outcomes … c, d Bean plots showing the distribution
of DNA methylation (%mC) of individual CpGs, both genome wide (c) and at CpG islands (d). …
of DNA methylation (%mC) of individual CpGs, both genome wide (c) and at CpG islands (d). …
Derivation of novel human ground state naive pluripotent stem cells
…, D Schneir, T Shwartz, S Gilad, D Amann-Zalcenstein… - Nature, 2013 - nature.com
Mouse embryonic stem (ES) cells are isolated from the inner cell mass of blastocysts, and can
be preserved in vitro in a naive inner-cell-mass-like configuration by providing exogenous …
be preserved in vitro in a naive inner-cell-mass-like configuration by providing exogenous …
SIS-seq, a molecular 'time machine', connects single cell fate with gene programs
L Tian, J Schreuder, D Zalcenstein, J Tran, N Kocovski… - bioRxiv, 2018 - biorxiv.org
Conventional single cell RNA-seq methods are destructive, such that a given cell cannot
also then be tested for fate and function, without a time machine. Here, we develop a clonal …
also then be tested for fate and function, without a time machine. Here, we develop a clonal …
Deterministic direct reprogramming of somatic cells to pluripotency
…, Z Mukamel, T Hagai, S Gilad, D Amann-Zalcenstein… - Nature, 2013 - nature.com
Somatic cells can be inefficiently and stochastically reprogrammed into induced pluripotent
stem (iPS) cells by exogenous expression of Oct4 (also called Pou5f1), Sox2, Klf4 and Myc (…
stem (iPS) cells by exogenous expression of Oct4 (also called Pou5f1), Sox2, Klf4 and Myc (…
Meta-analysis of 32 genome-wide linkage studies of schizophrenia
A genome scan meta-a nalysis (GSMA) was carried out on 32 independent genome-wide
linkage scan analyses that included 3255 pedigrees with 7413 genotyped cases affected with …
linkage scan analyses that included 3255 pedigrees with 7413 genotyped cases affected with …
The H3K27 demethylase Utx regulates somatic and germ cell epigenetic reprogramming
…, Y Rais, V Krupalnik, M Zerbib, D Amann-Zalcenstein… - Nature, 2012 - nature.com
Induced pluripotent stem cells (iPSCs) can be derived from somatic cells by ectopic expression
of different transcription factors, classically Oct4 (also known as Pou5f1), Sox2, Klf4 and …
of different transcription factors, classically Oct4 (also known as Pou5f1), Sox2, Klf4 and …
[PDF][PDF] A high-throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals
…, D Amann-Zalcenstein, A Weiner, D Friedrich… - Molecular cell, 2012 - cell.com
Understanding the principles governing mammalian gene regulation has been hampered by
the difficulty in measuring in vivo binding dynamics of large numbers of transcription factors …
the difficulty in measuring in vivo binding dynamics of large numbers of transcription factors …
High-throughput chromatin immunoprecipitation for genome-wide mapping of in vivo protein-DNA interactions and epigenomic states
…, D Jaitin, D Amann-Zalcenstein, D Lara-Astiaso… - Nature protocols, 2013 - nature.com
… (d,e) Beads are washed to reduce unspecific interactions (d) and the sample is eluted
from the beads, treated with RNase and proteinase K and is then reverse cross-linked (e). (f) …
from the beads, treated with RNase and proteinase K and is then reverse cross-linked (e). (f) …