Epigenetic polymorphism and the stochastic formation of differentially methylated regions in normal and cancerous tissues

…, R Brosh, S Horn-Saban, DA Zalcenstein… - Nature …, 2012 - nature.com
DNA methylation has been comprehensively profiled in normal and cancer cells, but the
dynamics that form, maintain and reprogram differentially methylated regions remain enigmatic. …

[PDF][PDF] Interconversion between tumorigenic and differentiated states in acute myeloid leukemia

…, DA Zalcenstein, L DiRago, S Wang, D Metcalf… - Cell stem cell, 2019 - cell.com
Tumors are composed of phenotypically heterogeneous cancer cells that often resemble
various differentiation states of their lineage of origin. Within this hierarchy, it is thought that an …

[HTML][HTML] Unique properties of a subset of human pluripotent stem cells with high capacity for self-renewal

…, ME Blewitt, ME Ritchie, SH Naik, D Zalcenstein… - Nature …, 2020 - nature.com
… Results in b and d display representative outcomes … c, d Bean plots showing the distribution
of DNA methylation (%mC) of individual CpGs, both genome wide (c) and at CpG islands (d). …

Derivation of novel human ground state naive pluripotent stem cells

…, D Schneir, T Shwartz, S Gilad, D Amann-Zalcenstein… - Nature, 2013 - nature.com
Mouse embryonic stem (ES) cells are isolated from the inner cell mass of blastocysts, and can
be preserved in vitro in a naive inner-cell-mass-like configuration by providing exogenous …

SIS-seq, a molecular 'time machine', connects single cell fate with gene programs

L Tian, J Schreuder, D Zalcenstein, J Tran, N Kocovski… - bioRxiv, 2018 - biorxiv.org
Conventional single cell RNA-seq methods are destructive, such that a given cell cannot
also then be tested for fate and function, without a time machine. Here, we develop a clonal …

Deterministic direct reprogramming of somatic cells to pluripotency

…, Z Mukamel, T Hagai, S Gilad, D Amann-Zalcenstein… - Nature, 2013 - nature.com
Somatic cells can be inefficiently and stochastically reprogrammed into induced pluripotent
stem (iPS) cells by exogenous expression of Oct4 (also called Pou5f1), Sox2, Klf4 and Myc (…

Meta-analysis of 32 genome-wide linkage studies of schizophrenia

…, MT Pato, JL Roos, Y Kohn, D Amann-Zalcenstein… - Molecular …, 2009 - nature.com
A genome scan meta-a nalysis (GSMA) was carried out on 32 independent genome-wide
linkage scan analyses that included 3255 pedigrees with 7413 genotyped cases affected with …

The H3K27 demethylase Utx regulates somatic and germ cell epigenetic reprogramming

…, Y Rais, V Krupalnik, M Zerbib, D Amann-Zalcenstein… - Nature, 2012 - nature.com
Induced pluripotent stem cells (iPSCs) can be derived from somatic cells by ectopic expression
of different transcription factors, classically Oct4 (also known as Pou5f1), Sox2, Klf4 and …

[PDF][PDF] A high-throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals

…, D Amann-Zalcenstein, A Weiner, D Friedrich… - Molecular cell, 2012 - cell.com
Understanding the principles governing mammalian gene regulation has been hampered by
the difficulty in measuring in vivo binding dynamics of large numbers of transcription factors …

High-throughput chromatin immunoprecipitation for genome-wide mapping of in vivo protein-DNA interactions and epigenomic states

…, D Jaitin, D Amann-Zalcenstein, D Lara-Astiaso… - Nature protocols, 2013 - nature.com
… (d,e) Beads are washed to reduce unspecific interactions (d) and the sample is eluted
from the beads, treated with RNase and proteinase K and is then reverse cross-linked (e). (f) …