User profiles for D. Ziemianowicz
Daniel S. ZiemianowiczPostdoctoral Fellow, EMBL Verified email at embl-hamburg.de Cited by 424 |
[HTML][HTML] New opportunities in integrative structural modeling
DS Ziemianowicz, J Kosinski - Current Opinion in Structural Biology, 2022 - Elsevier
Integrative structural modeling enables structure determination of macromolecules and their
complexes by integrating data from multiple sources. It has been successfully used to …
complexes by integrating data from multiple sources. It has been successfully used to …
First community-wide, comparative cross-linking mass spectrometry study
The number of publications in the field of chemical cross-linking combined with mass spectrometry
(XL-MS) to derive constraints for protein three-dimensional structure modeling and to …
(XL-MS) to derive constraints for protein three-dimensional structure modeling and to …
Structure of the mycobacterial ESX-5 type VII secretion system pore complex
…, C Ritter, G Chojnowski, DS Ziemianowicz… - Science …, 2021 - science.org
… (D) Top and bottom views of the rigid core of the ESX-5 membrane complex. … (D) Overview
of domain swap interactions occurring between protomeric units when viewed from the …
of domain swap interactions occurring between protomeric units when viewed from the …
Drug checking at an electronic dance music festival during the public health overdose emergency in British Columbia
…, C Sage, Y Xu, KW Tupper, D Ziemianowicz… - Canadian Journal of …, 2018 - Springer
… En 2017, l’ANKORS a pour la première fois employé les technologies permettant d’effectuer …
L’ANKORS fournissait une « boîte d’amnistie » à sa tente pour les festivaliers qui ont choisi …
L’ANKORS fournissait une « boîte d’amnistie » à sa tente pour les festivaliers qui ont choisi …
Amino acid insertion frequencies arising from photoproducts generated using aliphatic diazirines
DS Ziemianowicz, R Bomgarden… - Journal of the …, 2017 - ACS Publications
… (d) Localization of carbene insertion sites within peptides using high-resolution MS/MS
data … For example, the lower insertion of butylammonium into D and E could arise from ion-pairing …
data … For example, the lower insertion of butylammonium into D and E could arise from ion-pairing …
[HTML][HTML] The substrate specificity of the human TRAPPII complex's Rab-guanine nucleotide exchange factor activity
…, U Dalwadi, KD Fleming, DS Ziemianowicz… - Communications …, 2020 - nature.com
The TRAnsport Protein Particle (TRAPP) complexes act as Guanine nucleotide exchange
factors (GEFs) for Rab GTPases, which are master regulators of membrane trafficking in …
factors (GEFs) for Rab GTPases, which are master regulators of membrane trafficking in …
Photo-cross-linking mass spectrometry and integrative modeling enables rapid screening of antigen interactions involving bacterial transferrin receptors
DS Ziemianowicz, D Ng, AB Schryvers… - Journal of proteome …, 2018 - ACS Publications
… (d) Venn diagram of overlap between reagents at the peptide level. … Overall, homo-bifunctional
cross-links could be localized with greater precision as expected (Figure 1d), although the …
cross-links could be localized with greater precision as expected (Figure 1d), although the …
Harmonizing structural mass spectrometry analyses in the mass spec studio
Structural Mass Spectrometry (SMS) provides a comprehensive toolbox for the analysis of
protein structure and function. It offers multiple sources of structural information that are …
protein structure and function. It offers multiple sources of structural information that are …
Quantitative analysis of protein covalent labeling mass spectrometry data in the mass spec studio
Covalent labeling with mass spectrometry (CL-MS) provides a direct measure of the chemical
and structural features of proteins with the potential for resolution at the amino-acid level. …
and structural features of proteins with the potential for resolution at the amino-acid level. …
Simultaneous proteoform analysis of histones H3 and H4 with a simplified middle-down proteomics method
CU Schräder, DS Ziemianowicz, K Merx… - Analytical …, 2018 - ACS Publications
Dynamic post-translational modifications of histones regulate transcriptional gene expression
in eukaryotes. Unique combinations of modifications, almost exclusively displayed at the …
in eukaryotes. Unique combinations of modifications, almost exclusively displayed at the …