User profiles for D. Ziemianowicz

Daniel S. Ziemianowicz

Postdoctoral Fellow, EMBL
Verified email at embl-hamburg.de
Cited by 424

[HTML][HTML] New opportunities in integrative structural modeling

DS Ziemianowicz, J Kosinski - Current Opinion in Structural Biology, 2022 - Elsevier
Integrative structural modeling enables structure determination of macromolecules and their
complexes by integrating data from multiple sources. It has been successfully used to …

First community-wide, comparative cross-linking mass spectrometry study

…, Y Xiang, S Yilmaz, A Zelter, D Ziemianowicz… - Analytical …, 2019 - ACS Publications
The number of publications in the field of chemical cross-linking combined with mass spectrometry
(XL-MS) to derive constraints for protein three-dimensional structure modeling and to …

Structure of the mycobacterial ESX-5 type VII secretion system pore complex

…, C Ritter, G Chojnowski, DS Ziemianowicz… - Science …, 2021 - science.org
… (D) Top and bottom views of the rigid core of the ESX-5 membrane complex. … (D) Overview
of domain swap interactions occurring between protomeric units when viewed from the …

Drug checking at an electronic dance music festival during the public health overdose emergency in British Columbia

…, C Sage, Y Xu, KW Tupper, D Ziemianowicz… - Canadian Journal of …, 2018 - Springer
… En 2017, l’ANKORS a pour la première fois employé les technologies permettant d’effectuer …
L’ANKORS fournissait une « boîte d’amnistie » à sa tente pour les festivaliers qui ont choisi …

Amino acid insertion frequencies arising from photoproducts generated using aliphatic diazirines

DS Ziemianowicz, R Bomgarden… - Journal of the …, 2017 - ACS Publications
… (d) Localization of carbene insertion sites within peptides using high-resolution MS/MS
data … For example, the lower insertion of butylammonium into D and E could arise from ion-pairing …

[HTML][HTML] The substrate specificity of the human TRAPPII complex's Rab-guanine nucleotide exchange factor activity

…, U Dalwadi, KD Fleming, DS Ziemianowicz… - Communications …, 2020 - nature.com
The TRAnsport Protein Particle (TRAPP) complexes act as Guanine nucleotide exchange
factors (GEFs) for Rab GTPases, which are master regulators of membrane trafficking in …

Photo-cross-linking mass spectrometry and integrative modeling enables rapid screening of antigen interactions involving bacterial transferrin receptors

DS Ziemianowicz, D Ng, AB Schryvers… - Journal of proteome …, 2018 - ACS Publications
… (d) Venn diagram of overlap between reagents at the peptide level. … Overall, homo-bifunctional
cross-links could be localized with greater precision as expected (Figure 1d), although the …

Harmonizing structural mass spectrometry analyses in the mass spec studio

DS Ziemianowicz, V Sarpe, DA Crowder, TJ Pells… - Journal of …, 2020 - Elsevier
Structural Mass Spectrometry (SMS) provides a comprehensive toolbox for the analysis of
protein structure and function. It offers multiple sources of structural information that are …

Quantitative analysis of protein covalent labeling mass spectrometry data in the mass spec studio

DS Ziemianowicz, V Sarpe, DC Schriemer - Analytical chemistry, 2019 - ACS Publications
Covalent labeling with mass spectrometry (CL-MS) provides a direct measure of the chemical
and structural features of proteins with the potential for resolution at the amino-acid level. …

Simultaneous proteoform analysis of histones H3 and H4 with a simplified middle-down proteomics method

CU Schräder, DS Ziemianowicz, K Merx… - Analytical …, 2018 - ACS Publications
Dynamic post-translational modifications of histones regulate transcriptional gene expression
in eukaryotes. Unique combinations of modifications, almost exclusively displayed at the …