User profiles for Daan C. Swarts

Daan C. Swarts

Assistant Professor/Personal Investigator | Wageningen University & Research
Verified email at wur.nl
Cited by 4259

The evolutionary journey of Argonaute proteins

DC Swarts, K Makarova, Y Wang, K Nakanishi… - Nature structural & …, 2014 - nature.com
Argonaute proteins are conserved throughout all domains of life. Recently characterized
prokaryotic Argonaute proteins (pAgos) participate in host defense by DNA interference, …

The CRISPRs, they are a-changin': how prokaryotes generate adaptive immunity

ER Westra, DC Swarts, RHJ Staals… - Annual review of …, 2012 - annualreviews.org
All organisms need to continuously adapt to changes in their environment. Through horizontal
gene transfer, bacteria and archaea can rapidly acquire new traits that may contribute to …

Cas9 versus Cas12a/Cpf1: Structure–function comparisons and implications for genome editing

DC Swarts, M Jinek - Wiley Interdisciplinary Reviews: RNA, 2018 - Wiley Online Library
Cas9 and Cas12a are multidomain CRISPR‐associated nucleases that can be programmed
with a guide RNA to bind and cleave complementary DNA targets. The guide RNA …

[HTML][HTML] CRISPR interference directs strand specific spacer acquisition

DC Swarts, C Mosterd, MWJ Van Passel, SJJ Brouns - PloS one, 2012 - journals.plos.org
Background CRISPR/Cas is a widespread adaptive immune system in prokaryotes. This
system integrates short stretches of DNA derived from invading nucleic acids into genomic …

[PDF][PDF] Structural basis for guide RNA processing and seed-dependent DNA targeting by CRISPR-Cas12a

DC Swarts, J van der Oost, M Jinek - Molecular cell, 2017 - cell.com
The CRISPR-associated protein Cas12a (Cpf1), which has been repurposed for genome
editing, possesses two distinct nuclease activities: endoribonuclease activity for processing its …

DNA-guided DNA interference by a prokaryotic Argonaute

DC Swarts, MM Jore, ER Westra, Y Zhu, JH Janssen… - Nature, 2014 - nature.com
RNA interference is widely distributed in eukaryotes and has a variety of functions, including
antiviral defence and gene regulation 1 , 2 . All RNA interference pathways use small single-…

[PDF][PDF] Mechanistic Insights into the cis-and trans-Acting DNase Activities of Cas12a

DC Swarts, M Jinek - Molecular cell, 2019 - cell.com
CRISPR-Cas12a (Cpf1) is an RNA-guided DNA-cutting nuclease that has been repurposed
for genome editing. Upon target DNA binding, Cas12a cleaves both the target DNA in cis …

[PDF][PDF] Short prokaryotic Argonaute systems trigger cell death upon detection of invading DNA

…, S Lindhoud, JJM Vervoort, SJJ Brouns, DC Swarts - Cell, 2022 - cell.com
… 0 -P binding residues in the pAgo MID domain (Figure S1C), we hypothesized that in … of the
Swarts lab and the Laboratory of Biochemistry for discussion. Research in the Swarts lab was …

Argonaute of the archaeon Pyrococcus furiosus is a DNA-guided nuclease that targets cognate DNA

DC Swarts, JW Hegge, I Hinojo, M Shiimori… - Nucleic acids …, 2015 - academic.oup.com
Functions of prokaryotic Argonautes (pAgo) have long remained elusive. Recently, Argonautes
of the bacteria Rhodobacter sphaeroides and Thermus thermophilus were demonstrated …

Structure-based cleavage mechanism of Thermus thermophilus Argonaute DNA guide strand-mediated DNA target cleavage

…, J Wang, Y Rao, W Tian, DC Swarts… - Proceedings of the …, 2014 - National Acad Sciences
We report on crystal structures of ternary Thermus thermophilus Argonaute (TtAgo) complexes
with 5′-phosphorylated guide DNA and a series of DNA targets. These ternary complex …