User profiles for Daan C. Swarts
Daan C. SwartsAssistant Professor/Personal Investigator | Wageningen University & Research Verified email at wur.nl Cited by 4259 |
The evolutionary journey of Argonaute proteins
Argonaute proteins are conserved throughout all domains of life. Recently characterized
prokaryotic Argonaute proteins (pAgos) participate in host defense by DNA interference, …
prokaryotic Argonaute proteins (pAgos) participate in host defense by DNA interference, …
The CRISPRs, they are a-changin': how prokaryotes generate adaptive immunity
All organisms need to continuously adapt to changes in their environment. Through horizontal
gene transfer, bacteria and archaea can rapidly acquire new traits that may contribute to …
gene transfer, bacteria and archaea can rapidly acquire new traits that may contribute to …
Cas9 versus Cas12a/Cpf1: Structure–function comparisons and implications for genome editing
Cas9 and Cas12a are multidomain CRISPR‐associated nucleases that can be programmed
with a guide RNA to bind and cleave complementary DNA targets. The guide RNA …
with a guide RNA to bind and cleave complementary DNA targets. The guide RNA …
[HTML][HTML] CRISPR interference directs strand specific spacer acquisition
Background CRISPR/Cas is a widespread adaptive immune system in prokaryotes. This
system integrates short stretches of DNA derived from invading nucleic acids into genomic …
system integrates short stretches of DNA derived from invading nucleic acids into genomic …
[PDF][PDF] Structural basis for guide RNA processing and seed-dependent DNA targeting by CRISPR-Cas12a
The CRISPR-associated protein Cas12a (Cpf1), which has been repurposed for genome
editing, possesses two distinct nuclease activities: endoribonuclease activity for processing its …
editing, possesses two distinct nuclease activities: endoribonuclease activity for processing its …
DNA-guided DNA interference by a prokaryotic Argonaute
RNA interference is widely distributed in eukaryotes and has a variety of functions, including
antiviral defence and gene regulation 1 , 2 . All RNA interference pathways use small single-…
antiviral defence and gene regulation 1 , 2 . All RNA interference pathways use small single-…
[PDF][PDF] Mechanistic Insights into the cis-and trans-Acting DNase Activities of Cas12a
CRISPR-Cas12a (Cpf1) is an RNA-guided DNA-cutting nuclease that has been repurposed
for genome editing. Upon target DNA binding, Cas12a cleaves both the target DNA in cis …
for genome editing. Upon target DNA binding, Cas12a cleaves both the target DNA in cis …
[PDF][PDF] Short prokaryotic Argonaute systems trigger cell death upon detection of invading DNA
… 0 -P binding residues in the pAgo MID domain (Figure S1C), we hypothesized that in … of the
Swarts lab and the Laboratory of Biochemistry for discussion. Research in the Swarts lab was …
Swarts lab and the Laboratory of Biochemistry for discussion. Research in the Swarts lab was …
Argonaute of the archaeon Pyrococcus furiosus is a DNA-guided nuclease that targets cognate DNA
Functions of prokaryotic Argonautes (pAgo) have long remained elusive. Recently, Argonautes
of the bacteria Rhodobacter sphaeroides and Thermus thermophilus were demonstrated …
of the bacteria Rhodobacter sphaeroides and Thermus thermophilus were demonstrated …
Structure-based cleavage mechanism of Thermus thermophilus Argonaute DNA guide strand-mediated DNA target cleavage
…, J Wang, Y Rao, W Tian, DC Swarts… - Proceedings of the …, 2014 - National Acad Sciences
We report on crystal structures of ternary Thermus thermophilus Argonaute (TtAgo) complexes
with 5′-phosphorylated guide DNA and a series of DNA targets. These ternary complex …
with 5′-phosphorylated guide DNA and a series of DNA targets. These ternary complex …