User profiles for Daan F. van den Berg
Daan Frits van den BergOther name: Daan F van den Berg TU Delft Brouns lab Verified email at tudelft.nl Cited by 357 |
[HTML][HTML] Severe COVID-19: NLRP3 inflammasome dysregulated
DF Van den Berg, AA Te Velde - Frontiers in immunology, 2020 - frontiersin.org
SARS-CoV-2 might directly activate NLRP3 inflammasome resulting in an endogenous
adjuvant activity necessary to mount a proper adaptive immune response against the virus. …
adjuvant activity necessary to mount a proper adaptive immune response against the virus. …
The gRAMP CRISPR-Cas effector is an RNA endonuclease complexed with a caspase-like peptidase
…, AC Haagsma, A Rodríguez-Molina, DF van den Berg… - Science, 2021 - science.org
Type III CRISPR-Cas immunity is widespread in prokaryotes and is generally mediated by
multisubunit effector complexes. These complexes recognize complementary viral transcripts …
multisubunit effector complexes. These complexes recognize complementary viral transcripts …
Phage tRNAs evade tRNA-targeting host defenses through anticodon loop mutations
DF van den Berg, BA van der Steen, AR Costa… - Elife, 2023 - elifesciences.org
Transfer RNAs (tRNAs) in bacteriophage genomes are widespread across bacterial host
genera, but their exact function has remained unclear for more than 50 years. Several …
genera, but their exact function has remained unclear for more than 50 years. Several …
[PDF][PDF] Genomic characterization of four novel bacteriophages infecting the clinical pathogen Klebsiella pneumoniae
Bacteriophages are an invaluable source of novel genetic diversity. Sequencing of phage
genomes can reveal new proteins with potential uses as biotechnological and medical tools, …
genomes can reveal new proteins with potential uses as biotechnological and medical tools, …
Accumulation of defense systems in phage-resistant strains of Pseudomonas aeruginosa
…, H van den Bossche, BE Bonilla, BA van der Steen… - Science …, 2024 - science.org
Prokaryotes encode multiple distinct anti-phage defense systems in their genomes. However,
the impact of carrying a multitude of defense systems on phage resistance remains unclear…
the impact of carrying a multitude of defense systems on phage resistance remains unclear…
[HTML][HTML] MukBEF-dependent chromosomal organization in widened Escherichia coli
…, JWJ Kerssemakers, DF van den Berg… - Frontiers in …, 2023 - frontiersin.org
The bacterial chromosome is spatially organized through protein-mediated compaction,
supercoiling, and cell-boundary confinement. Structural Maintenance of Chromosomes (SMC) …
supercoiling, and cell-boundary confinement. Structural Maintenance of Chromosomes (SMC) …
Accumulation of defense systems drives panphage resistance in Pseudomonas aeruginosa
…, H van den Bossche, BE Bonilla, BA van der Steen… - Biorxiv, 2022 - biorxiv.org
Prokaryotes carry multiple distinct anti-viral defense systems. However, the impact of carrying
a multitude of defense systems on virus resistance remains unclear, especially in a clinical …
a multitude of defense systems on virus resistance remains unclear, especially in a clinical …
An OmpW-dependent T4-like phage infects Serratia sp. ATCC 39006
M Mahler, LM Malone, DF van den Berg… - Microbial …, 2023 - microbiologyresearch.org
Serratia sp. ATCC 39006 is a Gram-negative bacterium that has been used to study the function
of phage defences, such as CRISPR–Cas, and phage counter-defence mechanisms. To …
of phage defences, such as CRISPR–Cas, and phage counter-defence mechanisms. To …
Benchmarking in optimization: Best practice and open issues
This survey compiles ideas and recommendations from more than a dozen researchers with
different backgrounds and from different institutes around the world. Promoting best practice …
different backgrounds and from different institutes around the world. Promoting best practice …
[PDF][PDF] Fireworks Algorithm versus Plant Propagation Algorithm.
W Vrielink, D Van den Berg - IJCCI, 2019 - scitepress.org
… van den Berg, 2019). Nonetheless, these principles create algorithms that are more
widely applicable, as is so aptly described by Kenneth Sörensen (Sörensen, 2015). Many “novel” …
widely applicable, as is so aptly described by Kenneth Sörensen (Sörensen, 2015). Many “novel” …