User profiles for Dae-Kyum Kim

Dae-Kyum Kim

Roswell Park Comprehensive Cancer Center
Verified email at roswellpark.org
Cited by 7986

A reference map of the human binary protein interactome

K Luck, DK Kim, L Lambourne, K Spirohn, BE Begg… - Nature, 2020 - nature.com
Global insights into cellular organization and genome function require comprehensive
understanding of the interactome networks that mediate genotype–phenotype relationships 1 , 2 . …

Gram‐positive bacteria produce membrane vesicles: Proteomics‐based characterization of Staphylococcus aureus‐derived membrane vesicles

…, DK Kim, JW Kim, JO Park, S Kim, SH Kim… - …, 2009 - Wiley Online Library
Although archaea, Gram‐negative bacteria, and mammalian cells constitutively secrete
membrane vesicles (MVs) as a mechanism for cell‐free intercellular communication, this cellular …

EVpedia: an integrated database of high‐throughput data for systemic analyses of extracellular vesicles

DK Kim, B Kang, OY Kim, D Choi, J Lee… - Journal of …, 2013 - Wiley Online Library
Secretion of extracellular vesicles is a general cellular activity that spans the range from
simple unicellular organisms (eg archaea; Gram‐positive and Gram‐negative bacteria) to …

Proteomics, transcriptomics and lipidomics of exosomes and ectosomes

DS Choi, DK Kim, YK Kim, YS Gho - Proteomics, 2013 - Wiley Online Library
Mammalian cells secrete two types of extracellular vesicles either constitutively or in a
regulated manner: exosomes (50–100 nm in diameter) released from the intracellular …

[HTML][HTML] Akkermansia muciniphila-derived extracellular vesicles influence gut permeability through the regulation of tight junctions

…, MS Kim, YK Jee, YS Gho, HS Park, YK Kim… - … & molecular medicine, 2018 - nature.com
The gut microbiota has an important role in the gut barrier, inflammation and metabolic functions.
Studies have identified a close association between the intestinal barrier and metabolic …

[HTML][HTML] Extracellular Vesicles Derived from Gut Microbiota, Especially Akkermansia muciniphila, Protect the Progression of Dextran Sulfate Sodium-Induced Colitis

…, TY Roh, SJ Myung, YS Gho, JG Kim, YK Kim - PloS one, 2013 - journals.plos.org
Gut microbiota play an important part in the pathogenesis of mucosal inflammation, such as
inflammatory bowel disease (IBD). However, owing to the complexity of the gut microbiota, …

Proteomics of extracellular vesicles: exosomes and ectosomes

DS Choi, DK Kim, YK Kim… - Mass spectrometry reviews, 2015 - Wiley Online Library
Almost all bacteria, archaea, and eukaryotic cells shed extracellular vesicles either constitutively
or in a regulated manner. These nanosized membrane vesicles are spherical, bilayered …

[HTML][HTML] Network-based prediction of protein interactions

…, C Pollis, S Schlabach, W Bian, DK Kim… - Nature …, 2019 - nature.com
Despite exceptional experimental efforts to map out the human interactome, the continued
data incompleteness limits our ability to understand the molecular roots of human disease. …

EVpedia: a community web portal for extracellular vesicles research

DK Kim, J Lee, SR Kim, DS Choi, YJ Yoon… - …, 2015 - academic.oup.com
Motivation: Extracellular vesicles (EVs) are spherical bilayered proteolipids, harboring
various bioactive molecules. Due to the complexity of the vesicular nomenclatures and …

[HTML][HTML] Large oncosomes contain distinct protein cargo and represent a separate functional class of tumor-derived extracellular vesicles

…, M Morello, G Kharmate, SC Jang, DK Kim… - Oncotarget, 2015 - ncbi.nlm.nih.gov
Large oncosomes (LO) are atypically large (1-10μm diameter) cancer-derived extracellular
vesicles (EVs), originating from the shedding of membrane blebs and associated with …