TopHat is a popular spliced aligner for RNA-sequence (RNA-seq) experiments. In this paper,
we describe TopHat2, which incorporates many significant enhancements to TopHat. …

The human reference genome represents only a small number of individuals, which limits its
usefulness for genotyping. We present a method named HISAT2 (hierarchical indexing for …

HISAT (hierarchical indexing for spliced alignment of transcripts) is a highly efficient system
for aligning reads from RNA sequencing experiments. HISAT uses an indexing scheme …

Centrifuge is a novel microbial classification engine that enables rapid, accurate, and sensitive
labeling of reads and quantification of species on desktop computers. The system uses …

Recent advances in high-throughput cDNA sequencing (RNA-seq) can reveal new genes
and splice variants and quantify expression genome-wide in a single assay. The volume and …

High-throughput sequencing of mRNA (RNA-seq) has become the standard method for
measuring and comparing the levels of gene expression in a wide variety of species and …

TopHat-Fusion is an algorithm designed to discover transcripts representing fusion gene
products, which result from the breakage and re-joining of two different chromosomes, or from …

A pretreatment of lignocellulosic biomass to produce biofuels, polymers, and other chemicals
plays a vital role in the biochemical conversion process toward disrupting the closely …

Virtual Reality Spectatorship (VRS) is becoming an emerging sport media consumption
trend as it delivers such optimal experience that maximizes user satisfaction. To clearly …

Sequencing technologies using nucleotide conversion techniques such as cytosine to
thymine in bisulfite-seq and thymine to cytosine in SLAM seq are powerful tools to explore the …