User profiles for Dagmar Waltemath
Dagmar WaltemathProfessor of Medical Informatics Verified email at uni-greifswald.de Cited by 2607 |
Controlled vocabularies and semantics in systems biology
The use of computational modeling to describe and analyze biological systems is at the heart
of systems biology. Model structures, simulation descriptions and numerical results can be …
of systems biology. Model structures, simulation descriptions and numerical results can be …
SBML Level 3: an extensible format for the exchange and reuse of biological models
Abstract Systems biology has experienced dramatic growth in the number, size, and
complexity of computational models. To reproduce simulation results and reuse models, …
complexity of computational models. To reproduce simulation results and reuse models, …
[HTML][HTML] Reproducible computational biology experiments with SED-ML-the simulation experiment description markup language
Background The increasing use of computational simulation experiments to inform modern
biological research creates new challenges to annotate, archive, share and reproduce such …
biological research creates new challenges to annotate, archive, share and reproduce such …
[HTML][HTML] Minimum information about a simulation experiment (MIASE)
D Waltemath, R Adams, DA Beard… - PLoS computational …, 2011 - journals.plos.org
Reproducibility of experiments is a basic requirement for science. Minimum Information (MI)
guidelines have proved a helpful means of enabling reuse of existing work in modern …
guidelines have proved a helpful means of enabling reuse of existing work in modern …
[HTML][HTML] COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project
Background With the ever increasing use of computational models in the biosciences, the
need to share models and reproduce the results of published studies efficiently and easily is …
need to share models and reproduce the results of published studies efficiently and easily is …
The systems biology markup language (SBML): language specification for level 3 version 2 core release 2
Computational models can help researchers to interpret data, understand biological functions,
and make quantitative predictions. The Systems Biology Markup Language (SBML) is a …
and make quantitative predictions. The Systems Biology Markup Language (SBML) is a …
Democratizing knowledge representation with BioCypher
Biomedical data are amassed at an ever-increasing rate, and machine learning tools that
use prior knowledge in combination with biomedical big data are gaining much traction 1, 2. …
use prior knowledge in combination with biomedical big data are gaining much traction 1, 2. …
[HTML][HTML] Promoting coordinated development of community-based information standards for modeling in biology: the COMBINE initiative
The Computational Modeling in Biology Network (COMBINE) is a consortium of groups
involved in the development of open community standards and formats used in computational …
involved in the development of open community standards and formats used in computational …
The systems biology markup language (SBML): language specification for level 3 version 2 core
Computational models can help researchers to interpret data, understand biological functions,
and make quantitative predictions. The Systems Biology Markup Language (SBML) is a …
and make quantitative predictions. The Systems Biology Markup Language (SBML) is a …
[HTML][HTML] Initiatives, concepts, and implementation Practices of the findable, accessible, interoperable, and reusable data principles in health data stewardship: Scoping …
ET Inau, J Sack, D Waltemath, AA Zeleke - Journal of Medical Internet …, 2023 - jmir.org
Background Thorough data stewardship is a key enabler of comprehensive health research.
Processes such as data collection, storage, access, sharing, and analytics require …
Processes such as data collection, storage, access, sharing, and analytics require …