User profiles for Daisuke Komura

Daisuke Komura

The University of Tokyo
Verified email at mu-tokyo.ac.jp
Cited by 11106

Global variation in copy number in the human genome

…, M Gratacos, J Huang, D Kalaitzopoulos, D Komura… - nature, 2006 - nature.com
Copy number variation (CNV) of DNA sequences is functionally significant but has yet to be
fully ascertained. We have constructed a first-generation CNV map of the human genome …

[HTML][HTML] Machine learning methods for histopathological image analysis

D Komura, S Ishikawa - Computational and structural biotechnology journal, 2018 - Elsevier
Abundant accumulation of digital histopathological images has led to the increased demand
for their analysis, such as computer-aided diagnosis using machine learning techniques. …

From detection of individual metastases to classification of lymph node status at the patient level: the camelyon17 challenge

…, S Zinger, K Fukuta, D Komura… - IEEE transactions on …, 2018 - ieeexplore.ieee.org
Automated detection of cancer metastases in lymph nodes has the potential to improve the
assessment of prognosis for patients. To enable fair comparison between the algorithms for …

Multiancestry genomic and transcriptomic analysis of gastric cancer

Y Totoki, M Saito-Adachi, Y Shiraishi, D Komura… - Nature Genetics, 2023 - nature.com
Gastric cancer is among the most common malignancies worldwide, characterized by
geographical, epidemiological and histological heterogeneity. Here, we report an extensive, …

Genome-wide detection of human copy number variations using high-density DNA oligonucleotide arrays

D Komura, F Shen, S Ishikawa, KR Fitch… - Genome …, 2006 - genome.cshlp.org
Recent reports indicate that copy number variations (CNVs) within the human genome
contribute to nucleotide diversity to a larger extent than single nucleotide polymorphisms (SNPs). …

A wave of nascent transcription on activated human genes

…, T Minami, K Inoue, D Komura… - Proceedings of the …, 2009 - National Acad Sciences
Genome-wide studies reveal that transcription by RNA polymerase II (Pol II) is dynamically
regulated. To obtain a comprehensive view of a single transcription cycle, we switched on …

[PDF][PDF] Helicobacter pylori CagA elicits BRCAness to induce genome instability that may underlie bacterial gastric carcinogenesis

S Imai, T Ooki, N Murata-Kamiya, D Komura… - Cell Host & Microbe, 2021 - cell.com
Infection with CagA-producing Helicobacter pylori plays a causative role in the development
of gastric cancer. Upon delivery into gastric epithelial cells, CagA deregulates prooncogenic …

Machine learning approaches for pathologic diagnosis

D Komura, S Ishikawa - Virchows Archiv, 2019 - Springer
Abstract Machine learning techniques, especially deep learning techniques such as convolutional
neural networks, have been successfully applied to general image recognitions since …

Loss of YAP1 defines neuroendocrine differentiation of lung tumors

…, T Nakano, T Tsuchiya, H Tsubochi, D Komura… - Cancer …, 2016 - Wiley Online Library
YAP 1, the main Hippo pathway effector, is a potent oncogene and is overexpressed in non‐small‐cell
lung cancer ( NSCLC ); however, the YAP 1 expression pattern in small‐cell lung …

[HTML][HTML] The niche component periostin is produced by cancer-associated fibroblasts, supporting growth of gastric cancer through ERK activation

Y Kikuchi, A Kunita, C Iwata, D Komura… - The American journal of …, 2014 - Elsevier
Overexpression of periostin (POSTN), an extracellular matrix protein, has been observed in
several cancers. We investigated the importance of POSTN in gastric cancer. Genome-wide …