[HTML][HTML] Meta-analysis of genome-wide association studies of asthma in ethnically diverse North American populations
…, DA Stern, JC Celedón, N Rafaels, D Capurso… - Nature …, 2011 - ncbi.nlm.nih.gov
Asthma is a common disease with a complex risk architecture including both genetic and
environmental factors. We performed a meta-analysis of North American genome-wide …
environmental factors. We performed a meta-analysis of North American genome-wide …
[PDF][PDF] DNA repair profiling reveals nonrandom outcomes at Cas9-mediated breaks
M van Overbeek, D Capurso, MM Carter… - Molecular cell, 2016 - cell.com
The repair outcomes at site-specific DNA double-strand breaks (DSBs) generated by the
RNA-guided DNA endonuclease Cas9 determine how gene function is altered. Despite the …
RNA-guided DNA endonuclease Cas9 determine how gene function is altered. Despite the …
[HTML][HTML] CHD5 is a tumor suppressor at human 1p36
A Bagchi, C Papazoglu, Y Wu, D Capurso, M Brodt… - Cell, 2007 - cell.com
Cancer gene discovery has relied extensively on analyzing tumors for gains and losses to
reveal the location of oncogenes and tumor suppressor genes, respectively. Deletions of 1p36 …
reveal the location of oncogenes and tumor suppressor genes, respectively. Deletions of 1p36 …
Mapping the genomic landscape of CRISPR–Cas9 cleavage
…, AM Lied, LS Edwards, AH Settle, D Capurso… - Nature …, 2017 - nature.com
RNA-guided CRISPR–Cas9 endonucleases are widely used for genome engineering, but
our understanding of Cas9 specificity remains incomplete. Here, we developed a biochemical …
our understanding of Cas9 specificity remains incomplete. Here, we developed a biochemical …
Multiplex chromatin interactions with single-molecule precision
The genomes of multicellular organisms are extensively folded into 3D chromosome territories
within the nucleus 1 . Advanced 3D genome-mapping methods that combine proximity …
within the nucleus 1 . Advanced 3D genome-mapping methods that combine proximity …
Chromosome position determines the success of double-strand break repair
Repair of a chromosomal double-strand break (DSB) by gene conversion depends on the
ability of the broken ends to encounter a donor sequence. To understand how chromosomal …
ability of the broken ends to encounter a donor sequence. To understand how chromosomal …
[PDF][PDF] Resequencing candidate genes implicates rare variants in asthma susceptibility
DG Torgerson, D Capurso, RA Mathias… - The American Journal of …, 2012 - cell.com
Common variation in over 100 genes has been implicated in the risk of developing asthma,
but the contribution of rare variants to asthma susceptibility remains largely unexplored. We …
but the contribution of rare variants to asthma susceptibility remains largely unexplored. We …
Discovering hotspots in functional genomic data superposed on 3D chromatin configuration reconstructions
D Capurso, H Bengtsson, MR Segal - Nucleic acids research, 2016 - academic.oup.com
The spatial organization of the genome influences cellular function, notably gene regulation.
Recent studies have assessed the three-dimensional (3D) co-localization of functional …
Recent studies have assessed the three-dimensional (3D) co-localization of functional …
Genome-wide ancestry association testing identifies a common European variant on 6q14. 1 as a risk factor for asthma in African American subjects
DG Torgerson, D Capurso, EJ Ampleford, X Li… - Journal of allergy and …, 2012 - Elsevier
BACKGROUND: Genetic variants that contribute to asthma susceptibility might be present at
varying frequencies in different populations, which is an important consideration and …
varying frequencies in different populations, which is an important consideration and …
Reproducibility of 3D chromatin configuration reconstructions
It is widely recognized that the three-dimensional (3D) architecture of eukaryotic chromatin
plays an important role in processes such as gene regulation and cancer-driving gene fusions…
plays an important role in processes such as gene regulation and cancer-driving gene fusions…