[PDF][PDF] Diet dominates host genotype in shaping the murine gut microbiota

RN Carmody, GK Gerber, JM Luevano, DM Gatti… - Cell host & …, 2015 - cell.com
Mammals exhibit marked interindividual variations in their gut microbiota, but it remains
unclear if this is primarily driven by host genetics or by extrinsic factors like dietary intake. To …

High-resolution genetic mapping using the Mouse Diversity outbred population

KL Svenson, DM Gatti, W Valdar, CE Welsh, R Cheng… - Genetics, 2012 - academic.oup.com
The JAX Diversity Outbred population is a new mouse resource derived from partially
inbred Collaborative Cross strains and maintained by randomized outcrossing. As such, it …

The diversity outbred mouse population

GA Churchill, DM Gatti, SC Munger, KL Svenson - Mammalian genome, 2012 - Springer
The Diversity Outbred (DO) population is a heterogeneous stock derived from the same eight
founder strains as the Collaborative Cross (CC) inbred strains. Genetically heterogeneous …

Defining the consequences of genetic variation on a proteome-wide scale

…, SC Munger, P Simecek, EL Huttlin, K Choi, DM Gatti… - Nature, 2016 - nature.com
Genetic variation modulates protein expression through both transcriptional and post-transcriptional
mechanisms. To characterize the consequences of natural genetic diversity on the …

R/qtl2: software for mapping quantitative trait loci with high-dimensional data and multiparent populations

KW Broman, DM Gatti, P Simecek, NA Furlotte… - Genetics, 2019 - academic.oup.com
R/qtl2 is an interactive software environment for mapping quantitative trait loci (QTL) in
experimental populations. The R/qtl2 software expands the scope of the widely-used R/qtl …

[HTML][HTML] Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays

M Dell'Acqua, DM Gatti, G Pea, F Cattonaro… - Genome biology, 2015 - Springer
Background Maize (Zea mays) is a globally produced crop with broad genetic and phenotypic
variation. New tools that improve our understanding of the genetic basis of quantitative …

Quantitative trait locus mapping methods for diversity outbred mice

DM Gatti, KL Svenson, A Shabalin… - G3: Genes …, 2014 - academic.oup.com
Genetic mapping studies in the mouse and other model organisms are used to search for
genes underlying complex phenotypes. Traditional genetic mapping studies that employ single…

[HTML][HTML] Genetic mapping of microbial and host traits reveals production of immunomodulatory lipids by Akkermansia muciniphila in the murine gut

…, DS Stapleton, ME Rabaglia, M Seldin, DM Gatti… - Nature …, 2023 - nature.com
The molecular bases of how host genetic variation impacts the gut microbiome remain
largely unknown. Here we used a genetically diverse mouse population and applied systems …

Diversity outbred mice identify population-based exposure thresholds and genetic factors that influence benzene-induced genotoxicity

JE French, DM Gatti, DL Morgan… - Environmental …, 2015 - ehp.niehs.nih.gov
Background Inhalation of benzene at levels below the current exposure limit values leads to
hematotoxicity in occupationally exposed workers. Objective We sought to evaluate …

Lung necrosis and neutrophils reflect common pathways of susceptibility to Mycobacterium tuberculosis in genetically diverse, immune-competent mice

…, R Cooper, C Abeijon, DM Gatti… - Disease models & …, 2015 - journals.biologists.com
Pulmonary tuberculosis (TB) is caused by Mycobacterium tuberculosis in susceptible
humans. Here, we infected Diversity Outbred (DO) mice with ∼100 bacilli by aerosol to model …