User profiles for Daniel M. Ibrahim

Daniel Murad Ibrahim

Team Leader, Max-Planck Institute for Molecular Genetics, Berlin
Verified email at molgen.mpg.de
Cited by 4722

The single-cell transcriptional landscape of mammalian organogenesis

J Cao, M Spielmann, X Qiu, X Huang, DM Ibrahim… - Nature, 2019 - nature.com
Mammalian organogenesis is a remarkable process. Within a short timeframe, the cells of
the three germ layers transform into an embryo that includes most of the major internal and …

Formation of new chromatin domains determines pathogenicity of genomic duplications

M Franke, DM Ibrahim, G Andrey, W Schwarzer… - Nature, 2016 - nature.com
Chromosome conformation capture methods have identified subchromosomal structures of
higher-order chromatin interactions called topologically associated domains (TADs) that are …

Functional dissection of the Sox9Kcnj2 locus identifies nonessential and instructive roles of TAD architecture

…, L Wittler, M Vingron, S Mundlos, DM Ibrahim - Nature …, 2019 - nature.com
The genome is organized in three-dimensional units called topologically associating domains
(TADs), through a process dependent on the cooperative action of cohesin and the DNA-…

[PDF][PDF] Deletions, inversions, duplications: engineering of structural variants using CRISPR/Cas in mice

…, M Franke, DM Ibrahim, BK Kragesteen, M Spielmann… - Cell reports, 2015 - cell.com
Structural variations (SVs) contribute to the variability of our genome and are often
associated with disease. Their study in model systems was hampered until now by labor-intensive …

[HTML][HTML] Unblending of transcriptional condensates in human repeat expansion disease

…, H Ewers, S Mundlos, A Meissner, DM Ibrahim… - Cell, 2020 - Elsevier
Expansions of amino acid repeats occur in >20 inherited human disorders, and many occur
in intrinsically disordered regions (IDRs) of transcription factors (TFs). Such diseases are …

[PDF][PDF] Repression and 3D-restructuring resolves regulatory conflicts in evolutionarily rearranged genomes

…, J Glaser, MHQ Phan, M Schindler, DM Ibrahim… - Cell, 2022 - cell.com
Regulatory landscapes drive complex developmental gene expression, but it remains unclear
how their integrity is maintained when incorporating novel genes and functions during …

Characterization of hundreds of regulatory landscapes in developing limbs reveals two regimes of chromatin folding

…, DM Ibrahim, C Paliou, M Hochradel… - Genome …, 2017 - genome.cshlp.org
Complex regulatory landscapes control the pleiotropic transcriptional activities of
developmental genes. For most genes, the number, location, and dynamics of their associated …

[PDF][PDF] Homeotic arm-to-leg transformation associated with genomic rearrangements at the PITX1 locus

…, PN Robinson, DM Ibrahim, M Franke… - The American Journal of …, 2012 - cell.com
The study of homeotic-transformation mutants in model organisms such as Drosophila
revolutionized the field of developmental biology, but how these mutants relate to human …

Serial genomic inversions induce tissue-specific architectural stripes, gene misexpression and congenital malformations

…, R Schöpflin, J Markowski, DM Ibrahim… - Nature cell …, 2019 - nature.com
Balanced chromosomal rearrangements such as inversions and translocations can cause
congenital disease or cancer by inappropriately rewiring promoter–enhancer contacts 1 , 2 . …

[HTML][HTML] Odd skipped-related 1 identifies a population of embryonic fibro-adipogenic progenitors regulating myogenesis during limb development

…, J Stumm, V Kappert, DM Ibrahim… - Nature …, 2017 - nature.com
Fibro-adipogenic progenitors (FAPs) are an interstitial cell population in adult skeletal
muscle that support muscle regeneration. During development, interstitial muscle connective …