User profiles for Daniel M. Ibrahim
Daniel Murad IbrahimTeam Leader, Max-Planck Institute for Molecular Genetics, Berlin Verified email at molgen.mpg.de Cited by 4722 |
The single-cell transcriptional landscape of mammalian organogenesis
Mammalian organogenesis is a remarkable process. Within a short timeframe, the cells of
the three germ layers transform into an embryo that includes most of the major internal and …
the three germ layers transform into an embryo that includes most of the major internal and …
Formation of new chromatin domains determines pathogenicity of genomic duplications
Chromosome conformation capture methods have identified subchromosomal structures of
higher-order chromatin interactions called topologically associated domains (TADs) that are …
higher-order chromatin interactions called topologically associated domains (TADs) that are …
Functional dissection of the Sox9–Kcnj2 locus identifies nonessential and instructive roles of TAD architecture
The genome is organized in three-dimensional units called topologically associating domains
(TADs), through a process dependent on the cooperative action of cohesin and the DNA-…
(TADs), through a process dependent on the cooperative action of cohesin and the DNA-…
[PDF][PDF] Deletions, inversions, duplications: engineering of structural variants using CRISPR/Cas in mice
Structural variations (SVs) contribute to the variability of our genome and are often
associated with disease. Their study in model systems was hampered until now by labor-intensive …
associated with disease. Their study in model systems was hampered until now by labor-intensive …
[HTML][HTML] Unblending of transcriptional condensates in human repeat expansion disease
Expansions of amino acid repeats occur in >20 inherited human disorders, and many occur
in intrinsically disordered regions (IDRs) of transcription factors (TFs). Such diseases are …
in intrinsically disordered regions (IDRs) of transcription factors (TFs). Such diseases are …
[PDF][PDF] Repression and 3D-restructuring resolves regulatory conflicts in evolutionarily rearranged genomes
…, J Glaser, MHQ Phan, M Schindler, DM Ibrahim… - Cell, 2022 - cell.com
Regulatory landscapes drive complex developmental gene expression, but it remains unclear
how their integrity is maintained when incorporating novel genes and functions during …
how their integrity is maintained when incorporating novel genes and functions during …
Characterization of hundreds of regulatory landscapes in developing limbs reveals two regimes of chromatin folding
…, DM Ibrahim, C Paliou, M Hochradel… - Genome …, 2017 - genome.cshlp.org
Complex regulatory landscapes control the pleiotropic transcriptional activities of
developmental genes. For most genes, the number, location, and dynamics of their associated …
developmental genes. For most genes, the number, location, and dynamics of their associated …
[PDF][PDF] Homeotic arm-to-leg transformation associated with genomic rearrangements at the PITX1 locus
The study of homeotic-transformation mutants in model organisms such as Drosophila
revolutionized the field of developmental biology, but how these mutants relate to human …
revolutionized the field of developmental biology, but how these mutants relate to human …
Serial genomic inversions induce tissue-specific architectural stripes, gene misexpression and congenital malformations
…, R Schöpflin, J Markowski, DM Ibrahim… - Nature cell …, 2019 - nature.com
Balanced chromosomal rearrangements such as inversions and translocations can cause
congenital disease or cancer by inappropriately rewiring promoter–enhancer contacts 1 , 2 . …
congenital disease or cancer by inappropriately rewiring promoter–enhancer contacts 1 , 2 . …
[HTML][HTML] Odd skipped-related 1 identifies a population of embryonic fibro-adipogenic progenitors regulating myogenesis during limb development
…, J Stumm, V Kappert, DM Ibrahim… - Nature …, 2017 - nature.com
Fibro-adipogenic progenitors (FAPs) are an interstitial cell population in adult skeletal
muscle that support muscle regeneration. During development, interstitial muscle connective …
muscle that support muscle regeneration. During development, interstitial muscle connective …