User profiles for Daniel Nicorici

Daniel Nicorici

Helsinki University
Verified email at helsinki.fi
Cited by 2119

FusionCatcher–a tool for finding somatic fusion genes in paired-end RNA-sequencing data

D Nicorici, M Şatalan, H Edgren, S Kangaspeska… - biorxiv, 2014 - biorxiv.org
FusionCatcher is a software tool for finding somatic fusion genes in paired-end RNA-sequencing
data from human or other vertebrates. FusionCatcher achieves competitive detection …

[HTML][HTML] Identification of fusion genes in breast cancer by paired-end RNA-sequencing

H Edgren, A Murumagi, S Kangaspeska, D Nicorici… - Genome biology, 2011 - Springer
Background Until recently, chromosomal translocations and fusion genes have been an
underappreciated class of mutations in solid tumors. Next-generation sequencing technologies …

Systematic analysis of microRNAs targeting the androgen receptor in prostate cancer cells

…, A Edsjö, S Kangaspeska, H Edgren, D Nicorici… - Cancer research, 2011 - AACR
Androgen receptor (AR) is expressed in all stages of prostate cancer progression, including
in castration-resistant tumors. Eliminating AR function continues to represent a focus of …

The gene expression signature of genomic instability in breast cancer is an independent predictor of clinical outcome

…, UJ Roblick, NK Bündgen, D Nicorici… - … journal of cancer, 2009 - Wiley Online Library
Recently, expression profiling of breast carcinomas has revealed gene signatures that
predict clinical outcome, and discerned prognostically relevant breast cancer subtypes. …

Global Gene Expression Profile of Human Cord Blood–Derived CD133+ Cells

…, H Hemmoranta, S Hautaniemi, J Niemi, D Nicorici… - Stem …, 2006 - academic.oup.com
Human cord blood (CB)–derived CD133 + cells carry characteristics of primitive
hematopoietic cells and proffer an alternative for CD34 + cells in hematopoietic stem cell (HSC) …

Gene-expression profiling predicts recurrence in Dukes' C colorectal cancer

…, P Alhopuro, H Sammalkorpi, R Salovaara, D Nicorici… - Gastroenterology, 2005 - Elsevier
Background & Aims: Although approximately 50% of Dukes’ C colorectal cancer patients are
surgically cured, it is currently not possible to distinguish these patients from those at high …

[HTML][HTML] Reanalysis of RNA-sequencing data reveals several additional fusion genes with multiple isoforms

S Kangaspeska, S Hultsch, H Edgren, D Nicorici… - PloS one, 2012 - journals.plos.org
RNA-sequencing and tailored bioinformatic methodologies have paved the way for identification
of expressed fusion genes from the chaotic genomes of solid tumors. We have recently …

[HTML][HTML] MicroRNA expression profiling reveals miRNA families regulating specific biological pathways in mouse frontal cortex and hippocampus

J Juhila, T Sipilä, K Icay, D Nicorici, P Ellonen, A Kallio… - PloS one, 2011 - journals.plos.org
MicroRNAs (miRNAs) are small regulatory molecules that cause post-transcriptional gene
silencing. Although some miRNAs are known to have region-specific expression patterns in …

[HTML][HTML] Exploration of extracellular vesicle miRNAs, targeted mRNAs and pathways in prostate cancer: relation to disease status and progression

M Puhka, L Thierens, D Nicorici, T Forsman, T Mirtti… - Cancers, 2022 - mdpi.com
Simple Summary Prostate cancer lacks non-invasive specific biomarkers for aggressive
disease. Urinary extracellular vesicles (uEV) could provide such markers; however, due to …

[HTML][HTML] Adrenals contribute to growth of castration-resistant VCaP prostate cancer xenografts

…, A Mehmood, E Aho, TD Laajala, D Nicorici… - The American journal of …, 2018 - Elsevier
The role of adrenal androgens as drivers for castration-resistant prostate cancer (CRPC)
growth in humans is generally accepted; however, the value of preclinical mouse models of …