User profiles for Dario Boffelli

Dario Boffelli

Cedars Sinai Medical Center
Verified email at cshs.org
Cited by 5874

Phylogenetic shadowing of primate sequences to find functional regions of the human genome

D Boffelli, J McAuliffe, D Ovcharenko, KD Lewis… - Science, 2003 - science.org
Nonhuman primates represent the most relevant model organisms to understand the biology
of Homo sapiens. The recent divergence and associated overall sequence conservation …

Symbiosis insights through metagenomic analysis of a microbial consortium

…, M Huntemann, M Richter, FO Gloeckner, D Boffelli… - Nature, 2006 - nature.com
Symbioses between bacteria and eukaryotes are ubiquitous, yet our understanding of the
interactions driving these associations is hampered by our inability to cultivate most host-…

Selection-free genome editing of the sickle mutation in human adult hematopoietic stem/progenitor cells

…, SJ Heo, T Mitros, DP Muñoz, D Boffelli… - Science translational …, 2016 - science.org
Genetic diseases of blood cells are prime candidates for treatment through ex vivo gene
editing of CD34 + hematopoietic stem/progenitor cells (HSPCs), and a variety of technologies …

Comparative genomics at the vertebrate extremes

D Boffelli, MA Nobrega, EM Rubin - Nature Reviews Genetics, 2004 - nature.com
Annotators of the human genome are increasingly exploiting comparisons with genomes at
both the distal and proximal evolutionary edges of the vertebrate tree. Despite the sequence …

[HTML][HTML] Identification and correction of systematic error in high-throughput sequence data

F Meacham, D Boffelli, J Dhahbi, DIK Martin… - BMC …, 2011 - Springer
Background A feature common to all DNA sequencing technologies is the presence of base-call
errors in the sequenced reads. The implications of such errors are application specific, …

[HTML][HTML] 5′ tRNA halves are present as abundant complexes in serum, concentrated in blood cells, and modulated by aging and calorie restriction

…, SR Spindler, H Atamna, A Yamakawa, D Boffelli… - BMC genomics, 2013 - Springer
Background Small RNAs complex with proteins to mediate a variety of functions in animals
and plants. Some small RNAs, particularly miRNAs, circulate in mammalian blood and may …

Identification of a receptor mediating absorption of dietary cholesterol in the intestine

…, FE Weber, S Compassi, A Gemperli, D Boffelli… - Biochemistry, 1998 - ACS Publications
Here we show that scavenger receptor class B type I is present in the small-intestine brush
border membrane where it facilitates the uptake of dietary cholesterol from either bile salt …

Graded BMP signaling within intestinal crypt architecture directs self-organization of the Wnt-secreting stem cell niche

…, N McCarthy, E Malagola, G Tie, S Madha, D Boffelli… - Cell Stem Cell, 2023 - cell.com
Signals from the surrounding niche drive proliferation and suppress differentiation of intestinal
stem cells (ISCs) at the bottom of intestinal crypts. Among sub-epithelial support cells, …

Deep sequencing of serum small RNAs identifies patterns of 5′ tRNA half and YRNA fragment expression associated with breast cancer

…, SR Spindler, H Atamna, D Boffelli… - Biomarkers in …, 2014 - journals.sagepub.com
Small noncoding RNAs circulating in the blood may serve as signaling molecules because
of their ability to carry out a variety of cellular functions. We have previously described tRNA- …

Genome methylation in D. melanogaster is found at specific short motifs and is independent of DNMT2 activity

…, SJ Heo, L Pachter, DIK Martin, D Boffelli - Genome …, 2014 - genome.cshlp.org
Cytosine methylation in the genome of Drosophila melanogaster has been elusive and
controversial: Its location and function have not been established. We have used a novel and …