User profiles for Dave W Anderson

Dave Anderson

Director of Bioinformatics, University of Calgary
Verified email at ucalgary.ca
Cited by 888

[PDF][PDF] Evolution of DNA specificity in a transcription factor family produced a new gene regulatory module

AN McKeown, JT Bridgham, DW Anderson, MN Murphy… - Cell, 2014 - cell.com
Complex gene regulatory networks require transcription factors (TFs) to bind distinct DNA
sequences. To understand how novel TF specificity evolves, we combined phylogenetic, …

Intermolecular epistasis shaped the function and evolution of an ancient transcription factor and its DNA binding sites

DW Anderson, AN McKeown, JW Thornton - Elife, 2015 - elifesciences.org
… Now Anderson, McKeown and Thornton have characterized … To reconstruct these ancestral
proteins, Anderson, McKeown … Anderson, McKeown and Thornton then reconstructed all the …

EVOLUTION OF THE CLOSELY RELATED, SEX‐RELATED GENES DM‐W AND DMRT1 IN AFRICAN CLAWED FROGS (XENOPUS)

AJ Bewick, DW Anderson, BJ Evans - Evolution, 2011 - academic.oup.com
DM‐W is a dominant, female‐specific, regulator of sex determination in the African clawed
frog Xenopus laevis. This gene is derived from partial duplication of DMRT1, a male‐related …

Higher-order epistasis shapes the fitness landscape of a xenobiotic-degrading enzyme

G Yang, DW Anderson, F Baier, E Dohmen… - Nature Chemical …, 2019 - nature.com
Characterizing the adaptive landscapes that encompass the emergence of novel enzyme
functions can provide molecular insights into both enzymatic and evolutionary mechanisms. …

Supersonic turbulence, filamentary accretion and the rapid assembly of massive stars and discs

…, RE Pudritz, DW Anderson - Monthly Notices of the …, 2006 - academic.oup.com
We present a detailed computational study of the assembly of protostellar discs and massive
stars in molecular clouds with supersonic turbulence. We follow the evolution of large-scale …

[HTML][HTML] Uncovering DNA-PKcs ancient phylogeny, unique sequence motifs and insights for human disease

…, M Hammel, K Meek, DW Anderson… - Progress in biophysics …, 2021 - Elsevier
DNA-dependent protein kinase catalytic subunit (DNA-PKcs) is a key member of the
phosphatidylinositol-3 kinase-like (PIKK) family of protein kinases with critical roles in DNA-double …

[HTML][HTML] The adaptive landscape of a metallo-enzyme is shaped by environment-dependent epistasis

DW Anderson, F Baier, G Yang, N Tokuriki - Nature Communications, 2021 - nature.com
Enzymes can evolve new catalytic activity when environmental changes present them with
novel substrates. Despite this seemingly straightforward relationship, factors other than the …

Statistical analysis of mutational epistasis to reveal intramolecular interaction networks in proteins

CM Miton, JZ Chen, K Ost, DW Anderson… - Methods in Enzymology, 2020 - Elsevier
Epistasis occurs when the combined effect of two or more mutations differs from the sum of
their individual effects, and reflects molecular interactions that affect the function and fitness of …

Exploring the sequence, function, and evolutionary space of protein superfamilies using sequence similarity networks and phylogenetic reconstructions

JN Copp, DW Anderson, E Akiva, PC Babbitt… - Methods in …, 2019 - Elsevier
Integrative computational methods can facilitate the discovery of new protein functions and
enzymatic reactions by enabling the observation and investigation of complex sequence-…

[HTML][HTML] Phylogenetic and ancestral sequence reconstruction of SARS-CoV-2 reveals latent capacity to bind human ACE2 receptor

E Brintnell, M Gupta, DW Anderson - Journal of Molecular Evolution, 2021 - Springer
SARS-CoV-2 is a unique event, having emerged suddenly as a highly infectious viral
pathogen for human populations. Previous phylogenetic analyses show its closest known …