Application of phylogenetic networks in evolutionary studies
The evolutionary history of a set of taxa is usually represented by a phylogenetic tree, and
this model has greatly facilitated the discussion and testing of hypotheses. However, it is well …
this model has greatly facilitated the discussion and testing of hypotheses. However, it is well …
DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists
… community by moderating the DAVID Forum. This article summarizes the key DAVID
components and tool suites in the newly released DAVID Bioinformatics Resources, highlighting …
components and tool suites in the newly released DAVID Bioinformatics Resources, highlighting …
From cells to organs: building polarized tissue
How do animal cells assemble into tissues and organs? A diverse array of tissue structures
and shapes can be formed by organizing groups of cells into different polarized …
and shapes can be formed by organizing groups of cells into different polarized …
[PDF][PDF] POPART: full-feature software for haplotype network construction
… Leigh* and David Bryant … (Clement, Posada & Crandall 2000), NETWORK (http://www.fluxus-engineering.com),
SPLITSTREE (Huson & Bryant 2006) and PEGAS (Paradis 2010), and these methods have …
SPLITSTREE (Huson & Bryant 2006) and PEGAS (Paradis 2010), and these methods have …
Neighbor-net: an agglomerative method for the construction of phylogenetic networks
D Bryant, V Moulton - Molecular biology and evolution, 2004 - academic.oup.com
We present Neighbor-Net, a distance based method for constructing phylogenetic networks
that is based on the Neighbor-Joining (NJ) algorithm of Saitou and Nei. Neighbor-Net …
that is based on the Neighbor-Joining (NJ) algorithm of Saitou and Nei. Neighbor-Net …
A simple and robust statistical test for detecting the presence of recombination
Recombination is a powerful evolutionary force that merges historically distinct genotypes.
But the extent of recombination within many organisms is unknown, and even determining its …
But the extent of recombination within many organisms is unknown, and even determining its …
Linking agricultural practice to insect and bird populations: a historical study over three decades
There is continuing debate about the impact of agricultural practices on farmland wildlife. In
particular, it has been postulated that a general decline in insect abundance linked with …
particular, it has been postulated that a general decline in insect abundance linked with …
Inferring species trees directly from biallelic genetic markers: bypassing gene trees in a full coalescent analysis
The multispecies coalescent provides an elegant theoretical framework for estimating species
trees and species demographics from genetic markers. However, practical applications of …
trees and species demographics from genetic markers. However, practical applications of …
A molecular network for de novo generation of the apical surface and lumen
DM Bryant, A Datta, AE Rodríguez-Fraticelli… - Nature cell …, 2010 - nature.com
To form epithelial organs cells must polarize and generate de novo an apical domain and
lumen. Epithelial polarization is regulated by polarity complexes that are hypothesized to …
lumen. Epithelial polarization is regulated by polarity complexes that are hypothesized to …
Use of fluid attenuated inversion recovery (FLAIR) pulse sequences in MRI of the brain
JV Hajnal, DJ Bryant, L Kasuboski… - Journal of computer …, 1992 - journals.lww.com
Fluid attenuated inversion recovery pulse sequences with a long echo time (TE) have been
used to image the brain in one volunteer and four patients. The long inversion time used with …
used to image the brain in one volunteer and four patients. The long inversion time used with …