[HTML][HTML] Extensive sequencing of seven human genomes to characterize benchmark reference materials
JM Zook, D Catoe, J McDaniel, L Vang, N Spies… - Scientific data, 2016 - nature.com
The Genome in a Bottle Consortium, hosted by the National Institute of Standards and
Technology (NIST) is creating reference materials and data for human genome sequencing, as …
Technology (NIST) is creating reference materials and data for human genome sequencing, as …
SARS-CoV-2 RNA in wastewater settled solids is associated with COVID-19 cases in a large urban sewershed
Wastewater-based epidemiology may be useful for informing public health response to viral
diseases like COVID-19 caused by SARS-CoV-2. We quantified SARS-CoV-2 RNA in …
diseases like COVID-19 caused by SARS-CoV-2. We quantified SARS-CoV-2 RNA in …
Scaling of SARS-CoV-2 RNA in settled solids from multiple wastewater treatment plants to compare incidence rates of laboratory-confirmed COVID-19 in their …
Published and unpublished reports show that SARS-CoV-2 RNA in publicly owned treatment
work (POTW) wastewater influent and solids is associated with new COVID-19 cases or …
work (POTW) wastewater influent and solids is associated with new COVID-19 cases or …
[HTML][HTML] Single-cell quantification of ribosome occupancy in early mouse development
…, I Hoskins, S Rao, V Ghatpande, D Tran, D Catoe… - Nature, 2023 - nature.com
Translation regulation is critical for early mammalian embryonic development 1 . However,
previous studies had been restricted to bulk measurements 2 , precluding precise …
previous studies had been restricted to bulk measurements 2 , precluding precise …
Genome-wide reconstruction of complex structural variants using read clouds
N Spies, Z Weng, A Bishara, J McDaniel, D Catoe… - Nature …, 2017 - nature.com
In read cloud approaches, microfluidic partitioning of long genomic DNA fragments and
barcoding of shorter fragments derived from these fragments retains long-range information in …
barcoding of shorter fragments derived from these fragments retains long-range information in …
SARS-CoV-2 RNA and N antigen quantification via wastewater at the campus level, building cluster level, and individual-building level
W Zambrana, D Catoe, MM Coffman, S Kim… - Acs Es&T …, 2022 - ACS Publications
Monitoring wastewater for SARS-CoV-2 from populations smaller than those served by
wastewater treatment plants may help identify small spatial areas (subsewersheds) where COVID…
wastewater treatment plants may help identify small spatial areas (subsewersheds) where COVID…
[HTML][HTML] Simultaneous RNA purification and size selection using on-chip isotachophoresis with an ionic spacer
We present an on-chip method for the extraction of RNA within a specific size range from low-abundance
samples. We use isotachophoresis (ITP) with an ionic spacer and a sieving …
samples. We use isotachophoresis (ITP) with an ionic spacer and a sieving …
Interlaboratory performance and quantitative PCR data acceptance metrics for NIST SRM® 2917
…, JR Willis, M Karim, A Babatola, D Catoe… - Water research, 2022 - Elsevier
Surface water quality quantitative polymerase chain reaction (qPCR) technologies are expanding
from a subject of research to routine environmental and public health laboratory testing…
from a subject of research to routine environmental and public health laboratory testing…
[HTML][HTML] One-step RT-ddPCR for detection of SARS-CoV-2, bovine coronavirus, and PMMoV RNA in RNA derived from wastewater or primary settled solids
Goal: Quantify concentration of N1, N2, BCoV, and PMMoV in RNA extractions using RT-
ddPCR.
ddPCR.
Measurement of Oxidatively Induced DNA Damage in Caenorhabditis elegans with High-Salt DNA Extraction and Isotope-Dilution Mass Spectrometry
Caenorhabditis elegans is used extensively as a medical and toxicological model organism.
However, little is known about background levels of oxidatively induced DNA damage in the …
However, little is known about background levels of oxidatively induced DNA damage in the …