User profiles for David Kainer
David KainerSenior Research Fellow, ARC CoE for Plant Success, University of Queensland Verified email at uq.edu.au Cited by 2203 |
[HTML][HTML] Selecting optimal partitioning schemes for phylogenomic datasets
Background Partitioning involves estimating independent models of molecular evolution for
different subsets of sites in a sequence alignment, and has been shown to improve …
different subsets of sites in a sequence alignment, and has been shown to improve …
Accelerating climate resilient plant breeding by applying next-generation artificial intelligence
Breeding crops for high yield and superior adaptability to new and variable climates is
imperative to ensure continued food security, biomass production, and ecosystem services. …
imperative to ensure continued food security, biomass production, and ecosystem services. …
Plant-derived terpenes: A feedstock for specialty biofuels
Research toward renewable and sustainable energy has identified specific terpenes capable
of supplementing or replacing current petroleum-derived fuels. Despite being naturally …
of supplementing or replacing current petroleum-derived fuels. Despite being naturally …
MinIONQC: fast and simple quality control for MinION sequencing data
MinIONQC provides rapid diagnostic plots and quality control data from one or more flowcells
of sequencing data from Oxford Nanopore Technologies’ MinION instrument. It can be …
of sequencing data from Oxford Nanopore Technologies’ MinION instrument. It can be …
The effects of partitioning on phylogenetic inference
Partitioning is a commonly used method in phylogenetics that aims to accommodate variation
in substitution patterns among sites. Despite its popularity, there have been few systematic …
in substitution patterns among sites. Despite its popularity, there have been few systematic …
Multitrait genome‐wide association analysis of Populus trichocarpa identifies key polymorphisms controlling morphological and physiological traits
Genome‐wide association studies (GWAS) have great promise for identifying the loci that
contribute to adaptive variation, but the complex genetic architecture of many quantitative traits …
contribute to adaptive variation, but the complex genetic architecture of many quantitative traits …
[HTML][HTML] Potentially adaptive SARS-CoV-2 mutations discovered with novel spatiotemporal and explainable AI models
…, J Streich, JG Felipe Machado Gazolla, D Kainer… - Genome biology, 2020 - Springer
Background A mechanistic understanding of the spread of SARS-CoV-2 and diligent tracking
of ongoing mutagenesis are of key importance to plan robust strategies for confining its …
of ongoing mutagenesis are of key importance to plan robust strategies for confining its …
Identification of novel, replicable genetic risk loci for suicidal thoughts and behaviors among US military veterans
…, NW Hengartner, PC Jones, D Kainer… - JAMA …, 2023 - jamanetwork.com
Importance Suicide is a leading cause of death; however, the molecular genetic basis of
suicidal thoughts and behaviors (SITB) remains unknown. Objective To identify novel, replicable …
suicidal thoughts and behaviors (SITB) remains unknown. Objective To identify novel, replicable …
Harnessing the MinION: An example of how to establish long‐read sequencing in a laboratory using challenging plant tissue from Eucalyptus pauciflora
M Schalamun, R Nagar, D Kainer… - Molecular ecology …, 2019 - Wiley Online Library
Long‐read sequencing technologies are transforming our ability to assemble highly complex
genomes. Realizing their full potential is critically reliant on extracting high‐quality, high‐…
genomes. Realizing their full potential is critically reliant on extracting high‐quality, high‐…
[HTML][HTML] Assembly of chloroplast genomes with long- and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case
Background Chloroplasts are organelles that conduct photosynthesis in plant and algal cells.
The information chloroplast genome contained is widely used in agriculture and studies of …
The information chloroplast genome contained is widely used in agriculture and studies of …