[HTML][HTML] Constructing knowledge graphs and their biomedical applications
DN Nicholson, CS Greene - Computational and structural biotechnology …, 2020 - Elsevier
Abstract Knowledge graphs can support many biomedical applications. These graphs
represent biomedical concepts and relationships in the form of nodes and edges. In this review, …
represent biomedical concepts and relationships in the form of nodes and edges. In this review, …
[HTML][HTML] The Nephila clavipes genome highlights the diversity of spider silk genes and their complex expression
…, NF Lahens, SM Correa-Garhwal, DN Nicholson… - Nature Genetics, 2017 - nature.com
Spider silks are the toughest known biological materials, yet are lightweight and virtually
invisible to the human immune system, and they thus have revolutionary potential for medicine …
invisible to the human immune system, and they thus have revolutionary potential for medicine …
[HTML][HTML] Characterization of the genome and silk-gland transcriptomes of Darwin's bark spider (Caerostris darwini)
PL Babb, M Gregorič, NF Lahens, DN Nicholson… - Plos one, 2022 - journals.plos.org
Natural silks crafted by spiders comprise some of the most versatile materials known.
Artificial silks–based on the sequences of their natural brethren–replicate some desirable …
Artificial silks–based on the sequences of their natural brethren–replicate some desirable …
[HTML][HTML] Examining linguistic shifts between preprints and publications
DN Nicholson, V Rubinetti, D Hu, M Thielk… - PLoS …, 2022 - journals.plos.org
Preprints allow researchers to make their findings available to the scientific community before
they have undergone peer review. Studies on preprints within bioRxiv have been largely …
they have undergone peer review. Studies on preprints within bioRxiv have been largely …
[HTML][HTML] Changing word meanings in biomedical literature reveal pandemics and new technologies
DN Nicholson, F Alquaddoomi, V Rubinetti, CS Greene - BioData Mining, 2023 - Springer
While we often think of words as having a fixed meaning that we use to describe a changing
world, words are also dynamic and changing. Scientific research can also be remarkably fast…
world, words are also dynamic and changing. Scientific research can also be remarkably fast…
Linguistic Analysis of the bioRxiv Preprint Landscape
Preprints allow researchers to make their findings available to the scientific community before
they have undergone peer review. Studies on preprints within bioRxiv have been largely …
they have undergone peer review. Studies on preprints within bioRxiv have been largely …
[HTML][HTML] Expanding a database-derived biomedical knowledge graph via multi-relation extraction from biomedical abstracts
DN Nicholson, DS Himmelstein, CS Greene - BioData Mining, 2022 - Springer
Background Knowledge graphs support biomedical research efforts by providing contextual
information for biomedical entities, constructing networks, and supporting the interpretation …
information for biomedical entities, constructing networks, and supporting the interpretation …
Executable architecture for the first digitized division
…, M Hamrick, DN Nicholson… - Digitization of the …, 2000 - spiedigitallibrary.org
The C4ISR Architecture Framework, Version 2.0, provides the basis for all Department of
Defense commands, services and agencies to describe their Information System architectures. …
Defense commands, services and agencies to describe their Information System architectures. …
Hetnet connectivity search provides rapid insights into how biomedical entities are related
…, BJ Heil, F Alquaddoomi, D Hu, DN Nicholson… - …, 2023 - academic.oup.com
Background Hetnets, short for “heterogeneous networks,” contain multiple node and relationship
types and offer a way to encode biomedical knowledge. One such example, Hetionet, …
types and offer a way to encode biomedical knowledge. One such example, Hetionet, …
Reusing label functions to extract multiple types of biomedical relationships from biomedical abstracts at scale
DN Nicholson, DS Himmelstein, CS Greene - bioRxiv, 2019 - biorxiv.org
Abstract Knowledge bases support multiple research efforts such as providing contextual
information for biomedical entities, constructing networks, and supporting the interpretation of …
information for biomedical entities, constructing networks, and supporting the interpretation of …