User profiles for David Peede

David Peede

Brown University
Verified email at brown.edu
Cited by 396

[PDF][PDF] Widespread introgression across a phylogeny of 155 Drosophila genomes

A Suvorov, BY Kim, J Wang, EE Armstrong, D Peede… - Current Biology, 2022 - cell.com
Genome-scale sequence data have invigorated the study of hybridization and introgression,
particularly in animals. However, outside of a few notable cases, we lack systematic tests for …

Highly contiguous assemblies of 101 drosophilid genomes

…, E Delaney, A Thompson, AA Comeault, D Peede… - Elife, 2021 - elifesciences.org
Over 100 years of studies in Drosophila melanogaster and related species in the genus
Drosophila have facilitated key discoveries in genetics, genomics, and evolution. While high-…

Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations

…, J Obsteter, VAC Pavinato, A Pearson, D Peede… - Elife, 2023 - elifesciences.org
Simulation is a key tool in population genetics for both methods development and empirical
research, but producing simulations that recapitulate the main features of genomic datasets …

A need for standardized reporting of introgression: Insights from studies across eukaryotes

AJ Dagilis, D Peede, JM Coughlan, GI Jofre… - Evolution …, 2022 - academic.oup.com
With the rise of affordable next-generation sequencing technology, introgression—or the
exchange of genetic materials between taxa—has become widely perceived to be a ubiquitous …

Rapid and Predictable Evolution of Admixed Populations Between Two Drosophila Species Pairs

…, E Earley, A Serrato-Capuchina, D Peede… - Genetics, 2020 - academic.oup.com
In this article, Matute et al. report an experiment in which they generated eight interspecific
admixed populations using two species pairs of Drosophila. They found that in both species …

[PDF][PDF] Patterns of Population Structure and Introgression Among Recently Differentiated Drosophila melanogaster Populations

…, A Serrato-Capuchina, H Elias, D Peede… - Molecular Biology …, 2022 - academic.oup.com
Despite a century of genetic analysis, the evolutionary processes that have generated the
patterns of exceptional genetic and phenotypic variation in the model organism Drosophila …

15 years of introgression studies: quantifying gene flow across Eukaryotes

AJ Dagilis, D Peede, JM Coughlan, GI Jofre… - BioRxiv, 2021 - biorxiv.org
With the rise of affordable next generation sequencing technology, introgression — or the
exchange of genetic materials between taxa — is widely perceived to be a ubiquitous …

[HTML][HTML] Leveraging shared ancestral variation to detect local introgression

L Lopez Fang, D Peede, D Ortega-Del Vecchyo… - Plos …, 2024 - journals.plos.org
Introgression is a common evolutionary phenomenon that results in shared genetic material
across non-sister taxa. Existing statistical methods such as Patterson’s D statistic can detect …

Paternally Inherited P-Element Copy Number Affects the Magnitude of Hybrid Dysgenesis in Drosophila simulans and D. melanogaster

…, J Wang, E Earley, D Peede… - Genome Biology and …, 2020 - academic.oup.com
Transposable elements (TEs) are repetitive regions of DNA that are able to self-replicate
and reinsert themselves throughout host genomes. Since the discovery of TEs, a prevalent …

Pure species discriminate against hybrids in the Drosophila melanogaster species subgroup

…, TD Schwochert, S Zhang, B Roy, D Peede… - …, 2021 - academic.oup.com
Introgression, the exchange of alleles between species, is a common event in nature. This
transfer of alleles between species must happen through fertile hybrids. Characterizing the …