User profiles for David Peede
David PeedeBrown University Verified email at brown.edu Cited by 396 |
[PDF][PDF] Widespread introgression across a phylogeny of 155 Drosophila genomes
Genome-scale sequence data have invigorated the study of hybridization and introgression,
particularly in animals. However, outside of a few notable cases, we lack systematic tests for …
particularly in animals. However, outside of a few notable cases, we lack systematic tests for …
Highly contiguous assemblies of 101 drosophilid genomes
Over 100 years of studies in Drosophila melanogaster and related species in the genus
Drosophila have facilitated key discoveries in genetics, genomics, and evolution. While high-…
Drosophila have facilitated key discoveries in genetics, genomics, and evolution. While high-…
Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations
Simulation is a key tool in population genetics for both methods development and empirical
research, but producing simulations that recapitulate the main features of genomic datasets …
research, but producing simulations that recapitulate the main features of genomic datasets …
A need for standardized reporting of introgression: Insights from studies across eukaryotes
With the rise of affordable next-generation sequencing technology, introgression—or the
exchange of genetic materials between taxa—has become widely perceived to be a ubiquitous …
exchange of genetic materials between taxa—has become widely perceived to be a ubiquitous …
Rapid and Predictable Evolution of Admixed Populations Between Two Drosophila Species Pairs
In this article, Matute et al. report an experiment in which they generated eight interspecific
admixed populations using two species pairs of Drosophila. They found that in both species …
admixed populations using two species pairs of Drosophila. They found that in both species …
[PDF][PDF] Patterns of Population Structure and Introgression Among Recently Differentiated Drosophila melanogaster Populations
…, A Serrato-Capuchina, H Elias, D Peede… - Molecular Biology …, 2022 - academic.oup.com
Despite a century of genetic analysis, the evolutionary processes that have generated the
patterns of exceptional genetic and phenotypic variation in the model organism Drosophila …
patterns of exceptional genetic and phenotypic variation in the model organism Drosophila …
15 years of introgression studies: quantifying gene flow across Eukaryotes
With the rise of affordable next generation sequencing technology, introgression — or the
exchange of genetic materials between taxa — is widely perceived to be a ubiquitous …
exchange of genetic materials between taxa — is widely perceived to be a ubiquitous …
[HTML][HTML] Leveraging shared ancestral variation to detect local introgression
L Lopez Fang, D Peede, D Ortega-Del Vecchyo… - Plos …, 2024 - journals.plos.org
Introgression is a common evolutionary phenomenon that results in shared genetic material
across non-sister taxa. Existing statistical methods such as Patterson’s D statistic can detect …
across non-sister taxa. Existing statistical methods such as Patterson’s D statistic can detect …
Paternally Inherited P-Element Copy Number Affects the Magnitude of Hybrid Dysgenesis in Drosophila simulans and D. melanogaster
Transposable elements (TEs) are repetitive regions of DNA that are able to self-replicate
and reinsert themselves throughout host genomes. Since the discovery of TEs, a prevalent …
and reinsert themselves throughout host genomes. Since the discovery of TEs, a prevalent …
Pure species discriminate against hybrids in the Drosophila melanogaster species subgroup
…, TD Schwochert, S Zhang, B Roy, D Peede… - …, 2021 - academic.oup.com
Introgression, the exchange of alleles between species, is a common event in nature. This
transfer of alleles between species must happen through fertile hybrids. Characterizing the …
transfer of alleles between species must happen through fertile hybrids. Characterizing the …