We present a new computational method of docking pairs of proteins by using spherical
polar Fourier correlations to accelerate the search for candidate low‐energy conformations. …

HexServer ( http://hexserver.loria.fr/ ) is the first Fourier transform (FFT)-based protein
docking server to be powered by graphics processors. Using two graphics processors …

Motivation: Modelling protein–protein interactions (PPIs) is an increasingly important aspect
of structural bioinformatics. However, predicting PPIs using in silico docking techniques is …

Background The Critical Assessment of Functional Annotation (CAFA) is an ongoing, global,
community-driven effort to evaluate and improve the computational annotation of protein …

This article gives an overview of recent progress in protein-protein docking and it identifies
several directions for future research. Recent results from the CAPRI blind docking …

This article describes and reviews our efforts using Hex 3.1 to predict the docking modes of
the seven target protein–protein complexes presented in the CAPRI (Critical Assessment of …

This article describes our attempts to dock the targets in CAPRI Rounds 3–5 using Hex 4.2,
and it introduces a novel essential dynamics approach to generate multiple feasible …

Eukaryote ribosomal translation is terminated when release factor eRF1, in a complex with
eRF3, binds to one of the three stop codons. The tertiary structure and dimensions of eRF1 …

Motivation: Predicting how proteins interact at the molecular level is a computationally
intensive task. Many protein docking algorithms begin by using fast Fourier transform (FFT) …

A procedure that rapidly generates an approximate parametric representation of macromolecular
surface shapes is described. The parametrization is expressed as an expansion of real …