The PRoteomics IDEntifications (PRIDE) database ( https://www.ebi.ac.uk/pride/ ) is the world's
largest data repository of mass spectrometry-based proteomics data. PRIDE is one of the …

The PRoteomics IDEntifications (PRIDE) database ( https://www.ebi.ac.uk/pride/ ) is the
world’s largest data repository of mass spectrometry-based proteomics data, and is one of the …

Mass spectrometry (MS) is by far the most used experimental approach in high-throughput
proteomics. The ProteomeXchange (PX) consortium of proteomics resources ( http://www.…

The ProteomeXchange (PX) consortium of proteomics resources ( http://www.proteomexchange.org
) has standardized data submission and dissemination of mass spectrometry …

The EMBL-EBI Expression Atlas is an added value knowledge base that enables researchers
to answer the question of where (tissue, organism part, developmental stage, cell type) …

Using 11 proteomics datasets, mostly available through the PRIDE database, we assembled
a reference expression map for 191 cancer cell lines and 246 clinical tumour samples, …

We here present a chatbot assistant infrastructure ( https://www.ebi.ac.uk/pride/chatbot/ ) that
simplifies user interactions with the PRIDE database's documentation and dataset search …

Phosphorylation is the most studied post-translational modification, and has multiple
biological functions. In this study, we have re-analysed publicly available mass spectrometry …

The amount of public proteomics data is rapidly increasing but there is no standardized format
to describe the sample metadata and their relationship with the dataset files in a way that …

The increasingly large amount of proteomics data in the public domain enables, among other
applications, the combined analyses of datasets to create comparative protein expression …