User profiles for Dimos Goundaroulis
 | Dimos GoundaroulisLecturer, Baylor College of Medicine Verified email at bcm.edu Cited by 513 |
KnotProt 2.0: a database of proteins with knots and other entangled structures
…, P Rubach, D Goundaroulis… - Nucleic acids …, 2019 - academic.oup.com
The KnotProt 2.0 database (the updated version of the KnotProt database) collects information
about proteins which form knots and other entangled structures. New features in KnotProt …
about proteins which form knots and other entangled structures. New features in KnotProt …
[HTML][HTML] Topological models for open-knotted protein chains using the concepts of knotoids and bonded knotoids
In this paper we introduce a method that offers a detailed overview of the entanglement of
an open protein chain. Further, we present a purely topological model for classifying open …
an open protein chain. Further, we present a purely topological model for classifying open …
[HTML][HTML] Studies of global and local entanglements of individual protein chains using the concept of knotoids
We study here global and local entanglements of open protein chains by implementing the
concept of knotoids. Knotoids have been introduced in 2012 by Vladimir Turaev as a …
concept of knotoids. Knotoids have been introduced in 2012 by Vladimir Turaev as a …
Knoto-ID: a tool to study the entanglement of open protein chains using the concept of knotoids
The backbone of most proteins forms an open curve. To study their entanglement, a
common strategy consists in searching for the presence of knots in their backbones using …
common strategy consists in searching for the presence of knots in their backbones using …
[HTML][HTML] Chromatin loop extrusion and chromatin unknotting
It has been a puzzle how decondensed interphase chromosomes remain essentially unknotted.
The natural expectation is that in the presence of type II DNA topoisomerases that permit …
The natural expectation is that in the presence of type II DNA topoisomerases that permit …
[PDF][PDF] Chromatin is frequently unknotted at the megabase scale
Knots in the human genome would greatly impact diverse cellular processes ranging from
transcription to gene regulation. To date, it has not been possible to directly examine the …
transcription to gene regulation. To date, it has not been possible to directly examine the …
A systematic classification of knotoids on the plane and on the sphere
… DIMOS GOUNDAROULIS, JULIEN DORIER, AND ANDRZEJ STASIAK … DIMOS
GOUNDAROULIS, JULIEN DORIER, AND ANDRZEJ STASIAK … DIMOS GOUNDAROULIS …
GOUNDAROULIS, JULIEN DORIER, AND ANDRZEJ STASIAK … DIMOS GOUNDAROULIS …
-curves in proteins
P Dabrowski-Tumanski, D Goundaroulis… - arXiv preprint arXiv …, 2019 - arxiv.org
Apart from the knots formed by the main-chain, the proteins can form numerous topological
structures, when included the covalent and ion-mediated interactions. In this work, we define …
structures, when included the covalent and ion-mediated interactions. In this work, we define …
Framization of the Temperley-Lieb algebra
D Goundaroulis, J Juyumaya, A Kontogeorgis… - arXiv preprint arXiv …, 2013 - arxiv.org
We propose a framization of the Temperley-Lieb algebra. The framization is a procedure that
can briefly be described as the adding of framing to a known knot algebra in a way that is …
can briefly be described as the adding of framing to a known knot algebra in a way that is …
The Yokonuma-Temperley-Lieb Algebra
D Goundaroulis, J Juyumaya, A Kontogeorgis… - arXiv preprint arXiv …, 2010 - arxiv.org
In this paper we introduce the Yokonuma-Temperley-Lieb algebra as a quotient of the
Yokonuma-Hecke algebra over a two-sided ideal generated by an expression analogous to the …
Yokonuma-Hecke algebra over a two-sided ideal generated by an expression analogous to the …