[HTML][HTML] Multimodal spatiotemporal phenotyping of human retinal organoid development

…, Q Yu, P Noser, JS Fleck, B Gjeta, D Pavlinić… - Nature …, 2023 - nature.com
Organoids generated from human pluripotent stem cells provide experimental systems to
study development and disease, but quantitative measurements across different spatial scales …

[HTML][HTML] Vitamin A-retinoic acid signaling regulates hematopoietic stem cell dormancy

…, M Fawaz, D Vonficht, M Tesio, P Collier, D Pavlinic… - Cell, 2017 - cell.com
Dormant hematopoietic stem cells (dHSCs) are atop the hematopoietic hierarchy. The
molecular identity of dHSCs and the mechanisms regulating their maintenance or exit from …

[PDF][PDF] Cell types of the human retina and its organoids at single-cell resolution

…, CP Patino-Alvarez, P Galliker, SE Spirig, D Pavlinic… - Cell, 2020 - cell.com
Human organoids recapitulating the cell-type diversity and function of their target organ are
valuable for basic and translational research. We developed light-sensitive human retinal …

[HTML][HTML] Fast and highly sensitive full-length single-cell RNA sequencing using FLASH-seq

V Hahaut, D Pavlinic, W Carbone, S Schuierer… - Nature …, 2022 - nature.com
We present FLASH-seq (FS), a full-length single-cell RNA sequencing (scRNA-seq) method
with increased sensitivity and reduced hands-on time compared to Smart-seq3. The entire …

[PDF][PDF] Pyramidal neurons form active, transient, multilayered circuits perturbed by autism-associated mutations at the inception of neocortex

…, A Graff-Meyer, T Ulmer, S Haeuselmann, D Pavlinic… - Cell, 2023 - cell.com
Cortical circuits are composed predominantly of pyramidal-to-pyramidal neuron connections,
yet their assembly during embryonic development is not well understood. We show that …

Down syndrome: parental origin, recombination, and maternal age

…, IB Božović, Z Grubić, J Wagner, D Pavlinić… - Genetic testing and …, 2012 - liebertpub.com
The aims of the present study were to assess (1) the parental origin of trisomy 21 and the
stage in which nondisjunction occurs and (2) the relationship between altered genetic …

[HTML][HTML] Early transcriptional events linked to induction of diapause revealed by RNAseq in larvae of drosophilid fly, Chymomyza costata

…, J Korbelová, J Provazník, D Doležel, D Pavlinic… - BMC genomics, 2015 - Springer
Background Diapause is a developmental alternative to direct ontogeny in many invertebrates.
Its primary adaptive meaning is to secure survival over unfavourable seasons in a state of …

[PDF][PDF] MorphoSeq: full single-cell transcriptome dynamics up to gastrulation in a chordate

HL Sladitschek, UM Fiuza, D Pavlinic, V Benes… - Cell, 2020 - cell.com
Single-cell RNA sequencing (scRNA-seq) provides a leap forward in resolving cellular
diversity and developmental trajectories but fails to comprehensively delineate the spatial …

[PDF][PDF] Adult sox10+ cardiomyocytes contribute to myocardial regeneration in the zebrafish

…, G Guzman-Martinez, DMF Francisco, D Pavlinic… - Cell reports, 2019 - cell.com
During heart regeneration in the zebrafish, fibrotic tissue is replaced by newly formed
cardiomyocytes derived from preexisting ones. It is unclear whether the heart is composed of …

[HTML][HTML] Endogenous mouse dicer is an exclusively cytoplasmic protein

C Much, T Auchynnikava, D Pavlinic, A Buness… - PLoS …, 2016 - journals.plos.org
Dicer is a large multi-domain protein responsible for the ultimate step of microRNA and short-interfering
RNA biogenesis. In human and mouse cell lines, Dicer has been shown to be …