User profiles for Dipti D. Nayak
Dipti D NayakAssistant Professor, Department of Molecular and Cell Biology, UC Berkeley Verified email at berkeley.edu Cited by 456 |
Cas9-mediated genome editing in the methanogenic archaeon Methanosarcina acetivorans
DD Nayak, WW Metcalf - Proceedings of the National …, 2017 - National Acad Sciences
Although Cas9-mediated genome editing has proven to be a powerful genetic tool in
eukaryotes, its application in Bacteria has been limited because of inefficient targeting or repair; …
eukaryotes, its application in Bacteria has been limited because of inefficient targeting or repair; …
Post-translational thioamidation of methyl-coenzyme M reductase, a key enzyme in methanogenic and methanotrophic Archaea
10.7554/eLife.29218.001 Methyl-coenzyme M reductase (MCR), found in strictly anaerobic
methanogenic and methanotrophic archaea, catalyzes the reversible production and …
methanogenic and methanotrophic archaea, catalyzes the reversible production and …
[HTML][HTML] Functional interactions between posttranslationally modified amino acids of methyl-coenzyme M reductase in Methanosarcina acetivorans
The enzyme methyl-coenzyme M reductase (MCR) plays an important role in mediating
global levels of methane by catalyzing a reversible reaction that leads to the production or …
global levels of methane by catalyzing a reversible reaction that leads to the production or …
[HTML][HTML] EfgA is a conserved formaldehyde sensor that leads to bacterial growth arrest in response to elevated formaldehyde
Normal cellular processes give rise to toxic metabolites that cells must mitigate. Formaldehyde
is a universal stressor and potent metabolic toxin that is generated in organisms from …
is a universal stressor and potent metabolic toxin that is generated in organisms from …
Methylamine Utilization via the N-Methylglutamate Pathway in Methylobacterium extorquens PA1 Involves a Novel Flow of Carbon through C1 Assimilation and …
Methylotrophs grow on reduced single-carbon compounds like methylamine as the sole
source of carbon and energy. In Methylobacterium extorquens AM1, the best-studied aerobic …
source of carbon and energy. In Methylobacterium extorquens AM1, the best-studied aerobic …
The dual role of a multi‐heme cytochrome in methanogenesis: MmcA is important for energy conservation and carbon metabolism in Methanosarcina acetivorans
Methanogenic archaea belonging to the Order Methanosarcinales conserve energy using
an electron transport chain (ETC). In the genetically tractable strain Methanosarcina …
an electron transport chain (ETC). In the genetically tractable strain Methanosarcina …
[HTML][HTML] Genetic and Phenotypic Comparison of Facultative Methylotrophy between Methylobacterium extorquens Strains PA1 and AM1
Methylobacterium extorquens AM1, a strain serendipitously isolated half a century ago, has
become the best-characterized model system for the study of aerobic methylotrophy (the …
become the best-characterized model system for the study of aerobic methylotrophy (the …
McrD binds asymmetrically to methyl-coenzyme M reductase improving active-site accessibility during assembly
Methyl-coenzyme M reductase (MCR) catalyzes the formation of methane, and its activity
accounts for nearly all biologically produced methane released into the atmosphere. The …
accounts for nearly all biologically produced methane released into the atmosphere. The …
Transcriptional regulation of methanogenic metabolism in archaea
KE Shalvarjian, DD Nayak - Current Opinion in Microbiology, 2021 - Elsevier
… The authors would like to acknowledge members of the Nayak lab for their feedback and
input. Molecular graphics were produced using the UCSF Chimera package from the …
input. Molecular graphics were produced using the UCSF Chimera package from the …
[PDF][PDF] Selection maintains apparently degenerate metabolic pathways due to tradeoffs in using methylamine for carbon versus nitrogen
Microorganisms often encode multiple non-orthologous metabolic modules that catalyze the
same reaction. However, little experimental evidence actually demonstrates a selective …
same reaction. However, little experimental evidence actually demonstrates a selective …