User profiles for Dirk Eberhard

Dirk Eberhard

Thoraxklinik-Heidelberg gGmbH
Verified email at med.uni-heidelberg.de
Cited by 7898

A physical and functional map of the human TNF-α/NF-κB signal transduction pathway

…, G Bergamini, K Croughton, C Cruciat, D Eberhard… - Nature cell …, 2004 - nature.com
Signal transduction pathways are modular composites of functionally interdependent sets of
proteins that act in a coordinated fashion to transform environmental information into a …

Quantitative chemical proteomics reveals mechanisms of action of clinical ABL kinase inhibitors

M Bantscheff, D Eberhard, Y Abraham, S Bastuck… - Nature …, 2007 - nature.com
We describe a chemical proteomics approach to profile the interaction of small molecules
with hundreds of endogenously expressed protein kinases and purine-binding proteins. This …

Tracking cancer drugs in living cells by thermal profiling of the proteome

…, H Franken, T Werner, MF Savitski, D Eberhard… - Science, 2014 - science.org
INTRODUCTION Understanding drug mechanism poses the daunting challenge of determining
the affinity of the drug for all potential targets. Drug target engagement can be assessed …

A selective jumonji H3K27 demethylase inhibitor modulates the proinflammatory macrophage response

…, C Bountra, A Bridges, H Diallo, D Eberhard… - Nature, 2012 - nature.com
The jumonji (JMJ) family of histone demethylases are Fe 2+ - and α-ketoglutarate-dependent
oxygenases that are essential components of regulatory transcriptional chromatin …

Chemoproteomics profiling of HDAC inhibitors reveals selective targeting of HDAC complexes

…, M Delling, B Dümpelfeld, D Eberhard… - Nature …, 2011 - nature.com
The development of selective histone deacetylase (HDAC) inhibitors with anti-cancer and
anti-inflammatory properties remains challenging in large part owing to the difficulty of probing …

Inhibition of PAD4 activity is sufficient to disrupt mouse and human NET formation

…, C Chung, PD Craggs, RP Davis, D Eberhard… - Nature chemical …, 2015 - nature.com
PAD4 has been strongly implicated in the pathogenesis of autoimmune, cardiovascular and
oncological diseases through clinical genetics and gene disruption in mice. New selective …

Thermal proteome profiling monitors ligand interactions with cellular membrane proteins

FBM Reinhard, D Eberhard, T Werner, H Franken… - Nature …, 2015 - nature.com
We extended thermal proteome profiling to detect transmembrane protein–small molecule
interactions in cultured human cells. When we assessed the effects of detergents on ATP-…

[HTML][HTML] Robust and sensitive iTRAQ quantification on an LTQ Orbitrap mass spectrometer

M Bantscheff, M Boesche, D Eberhard… - Molecular & Cellular …, 2008 - ASBMB
Isobaric stable isotope tagging reagents such as tandem mass tags or isobaric tags for relative
and absolute quantification enable multiplexed quantification of peptides via reporter ion …

[HTML][HTML] Transcriptional repression by Pax5 (BSAP) through interaction with corepressors of the Groucho family

D Eberhard, G Jiménez, B Heavey… - The EMBO journal, 2000 - embopress.org
Pax5 (BSAP) functions as both a transcriptional activator and repressor during midbrain
patterning, B‐cell development and lymphomagenesis. Here we demonstrate that Pax5 exerts …

Biological plasticity rescues target activity in CRISPR knock outs

…, N Zinn, WF Mueller, S Clauder-Münster, D Eberhard… - Nature …, 2019 - nature.com
Gene knock outs (KOs) are efficiently engineered through CRISPR–Cas9-induced frameshift
mutations. While the efficiency of DNA editing is readily verified by DNA sequencing, a …