Conventional NK cells and tissue-resident ILC1s join forces to control liver metastasis

…, L Heeb, NG Nuñez, L Wyss, D Burri… - Proceedings of the …, 2021 - National Acad Sciences
The liver is a major metastatic target organ, and little is known about the role of immunity in
controlling hepatic metastases. Here, we discovered that the concerted and nonredundant …

[HTML][HTML] Spatial structure governs the mode of tumour evolution

R Noble, D Burri, C Le Sueur, J Lemant… - Nature ecology & …, 2022 - nature.com
Characterizing the mode—the way, manner or pattern—of evolution in tumours is important
for clinical forecasting and optimizing cancer treatment. Sequencing studies have inferred …

[HTML][HTML] Distinct and additive effects of calorie restriction and rapamycin in aging skeletal muscle

…, M Thürkauf, J Delezie, R Furrer, D Burri… - Nature …, 2022 - nature.com
Preserving skeletal muscle function is essential to maintain life quality at high age. Calorie
restriction (CR) potently extends health and lifespan, but is largely unachievable in humans, …

Extensible benchmarking of methods that identify and quantify polyadenylation sites from RNA-seq data

S Bryce-Smith, D Burri, MR Gazzara, CJ Herrmann… - RNA, 2023 - rnajournal.cshlp.org
The tremendous rate with which data is generated and analysis methods emerge makes it
increasingly difficult to keep track of their domain of applicability, assumptions, limitations, and …

Identification of experimentally-supported poly (A) sites in single-cell RNA-seq data with SCINPAS

Y Moon, D Burri, M Zavolan - NAR genomics and bioinformatics, 2023 - academic.oup.com
Alternative polyadenylation is a main driver of transcriptome diversity in mammals, generating
transcript isoforms with different 3’ ends via cleavage and polyadenylation at distinct …

Shortening of 3′ UTRs in most cell types composing tumor tissues implicates alternative polyadenylation in protein metabolism

D Burri, M Zavolan - RNA, 2021 - rnajournal.cshlp.org
During pre-mRNA maturation 3′ end processing can occur at different polyadenylation sites
in the 3′ untranslated region (3′ UTR) to give rise to transcript isoforms that differ in the …

ZARP: An automated workflow for processing of RNA-seq data

M Katsantoni, F Gypas, CJ Herrmann, D Burri, M Bak… - bioRxiv, 2021 - biorxiv.org
RNA sequencing (RNA-seq) is a crucial technique for many scientific studies and multiple
models, and software packages have been developed for the processing and analysis of such …

GDF15 mediates inflammation-associated bone loss through a brain-bone axis

R Van der Cruyssen, J Devan, I Heggli, D Burri… - bioRxiv, 2023 - biorxiv.org
Metabolic mediators play an important role in regulating chronic inflammation in the body.
Here we report an unexpected role for GDF15 (Growth Differentiation Factor 15), a central …

GDF15 mediates inflammation-associated bone loss through a brain-bone axis

D Elewaut, R Van der Cruyssen, J Devan, D Burri… - 2024 - researchsquare.com
Metabolic mediators play an important role in regulating inflammation (1). Rheumatoid
arthritis and spondyloarthritis are common inflammatory diseases of the joint, aggravated in …

Distinct and additive effects of calorie restriction and rapamycin in aging skeletal muscle

…, AS Ham, M Thürkauf, J Delezie, R Furrer, D Burri… - bioRxiv, 2021 - biorxiv.org
As global life expectancy continues to climb, maintaining skeletal muscle function is increasingly
essential to ensure a good life quality for aging populations. Calorie restriction (CR) is …